Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48503 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46866 * 299.99598 * 3 2 1 6 6 H 1.48490 * 109.47254 * 59.99805 * 3 2 1 7 7 C 1.40057 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00213 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99643 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99886 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99517 * 180.02562 * 11 9 7 13 13 H 1.08992 * 108.81914 * 33.48282 * 12 11 9 14 14 C 1.45884 * 108.75751 * 151.91698 * 12 11 9 15 15 C 1.54520 * 111.67234 * 182.25713 * 14 12 11 16 16 C 1.50531 * 108.86317 * 282.74808 * 15 14 12 17 17 C 1.53921 * 112.93435 * 91.75306 * 16 15 14 18 18 N 1.47980 * 113.36042 * 317.73866 * 17 16 15 19 19 C 1.44307 * 113.62884 * 318.19615 * 18 17 16 20 20 H 0.97005 * 119.99732 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00431 * 359.97438 * 11 9 7 22 22 H 1.09004 * 109.03836 * 302.82041 * 14 12 11 23 23 H 1.09000 * 109.03994 * 61.69070 * 14 12 11 24 24 H 1.09003 * 109.57169 * 42.56664 * 15 14 12 25 25 H 1.09007 * 109.56911 * 162.93163 * 15 14 12 26 26 H 1.08995 * 108.79299 * 212.64751 * 16 15 14 27 27 H 1.09000 * 108.78853 * 330.98393 * 16 15 14 28 28 H 1.09003 * 108.70799 * 78.75261 * 17 16 15 29 29 H 1.08995 * 108.71010 * 196.88783 * 17 16 15 30 30 H 1.00906 * 111.06058 * 192.20922 * 18 17 16 31 31 H 1.09002 * 109.69591 * 335.62041 * 19 18 17 32 32 H 1.08996 * 109.69408 * 215.07351 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3462 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8820 2.3964 1.2124 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2749 -2.4806 0.0005 10 8 0.0581 -2.4805 -0.0004 11 7 1.9488 -3.6478 0.0016 12 6 1.2161 -4.9164 0.0010 13 1 0.2959 -4.7907 -0.5692 14 6 2.0377 -5.9323 -0.6481 15 6 1.3038 -7.2893 -0.7357 16 6 1.3480 -7.9545 0.6139 17 6 0.1270 -7.6182 1.4887 18 7 -0.2645 -6.1925 1.4265 19 6 0.8559 -5.2834 1.4524 20 1 -0.4850 0.8401 -0.0004 21 1 2.9188 -3.6479 0.0020 22 1 2.2876 -5.5975 -1.6549 23 1 2.9583 -6.0620 -0.0791 24 1 0.2667 -7.1253 -1.0282 25 1 1.7968 -7.9241 -1.4721 26 1 1.3915 -9.0343 0.4719 27 1 2.2500 -7.6328 1.1345 28 1 -0.7159 -8.2269 1.1614 29 1 0.3583 -7.8701 2.5236 30 1 -0.9298 -5.9672 2.1510 31 1 1.7083 -5.7644 1.9322 32 1 0.5851 -4.3823 2.0027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258069508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = -72.383357 kcal Electronic energy + Delta-G solvation = -14491.888811 eV Core-core repulsion = 12064.604013 eV Total energy + Delta-G solvation = -2427.284798 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.43735 -38.53748 -35.39933 -34.52378 -33.91700 -31.40227 -28.30872 -26.29867 -25.76758 -22.08292 -21.39411 -20.59985 -19.09216 -17.76501 -17.44513 -16.64232 -15.95175 -15.71059 -15.30426 -14.72225 -14.55636 -14.26166 -14.08624 -13.65252 -13.10107 -12.95883 -12.72424 -12.61487 -12.33150 -11.97589 -11.80986 -11.64414 -11.44352 -11.36059 -10.93507 -9.79364 -9.62245 -9.06165 -8.26432 -6.83328 1.39974 1.40449 1.58198 2.25424 2.50359 2.99694 3.44052 3.67878 3.86323 4.05481 4.11951 4.22267 4.39349 4.57140 4.61375 4.69587 4.74493 4.83898 5.10994 5.17629 5.27082 5.32507 5.33517 5.43044 5.53305 5.91509 6.23097 6.30165 6.42113 6.49623 6.88963 7.62040 8.54695 8.71944 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.065596 B = 0.007151 C = 0.006807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.753096 B = 3914.614800 C = 4112.463969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.628 6.628 11 N -0.756 5.756 12 C 0.160 3.840 13 H 0.035 0.965 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.118 4.118 17 C 0.062 3.938 18 N -0.711 5.711 19 C 0.079 3.921 20 H 0.273 0.727 21 H 0.391 0.609 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.347 0.653 31 H 0.052 0.948 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -12.767 1.992 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.613 4.613 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.514 6.514 11 N -0.410 5.410 12 C 0.054 3.946 13 H 0.053 0.947 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.156 4.156 17 C -0.065 4.065 18 N -0.344 5.344 19 C -0.053 4.053 20 H 0.083 0.917 21 H 0.225 0.775 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.166 0.834 31 H 0.070 0.930 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.099 -12.721 1.332 13.770 hybrid contribution 0.525 0.948 0.940 1.434 sum 5.624 -11.773 2.273 13.244 Atomic orbital electron populations 1.70211 1.09540 1.28739 1.36813 1.26985 0.95520 1.04973 0.91257 0.84971 0.79329 0.75441 0.78507 1.17002 1.19366 1.19356 1.21498 0.94665 0.90312 1.54844 0.89626 1.18583 0.86892 0.84401 0.75902 1.90559 1.16151 1.87906 1.56818 1.46066 1.09014 1.04945 1.80937 1.19547 0.95181 0.84051 0.95784 0.94670 1.20797 0.98843 0.95377 1.00404 1.21171 1.00506 0.94406 0.97893 1.21421 0.97224 1.01652 0.95286 1.22363 0.98693 0.87134 0.98351 1.58793 1.16483 1.03660 1.55493 1.21716 0.92893 0.94120 0.96523 0.91689 0.77522 0.92426 0.90694 0.92705 0.89680 0.88871 0.92226 0.90312 0.94415 0.83436 0.93036 0.95425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.71 11.83 21.84 0.26 -51.45 16 2 C 0.03 1.56 5.50 85.31 0.47 2.03 16 3 Si 1.00 41.83 29.56 68.60 2.03 43.86 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.58 -33.54 9.54 24.83 0.24 -33.30 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.54 32.22 7.59 86.36 0.66 32.87 16 10 O -0.63 -43.41 14.64 -4.30 -0.06 -43.47 16 11 N -0.76 -35.24 4.98 -455.75 -2.27 -37.51 16 12 C 0.16 6.53 2.10 43.14 0.09 6.62 16 13 H 0.03 1.77 7.43 -2.39 -0.02 1.75 16 14 C -0.12 -3.51 4.70 28.93 0.14 -3.37 16 15 C -0.10 -2.48 5.63 30.31 0.17 -2.31 16 16 C -0.12 -2.42 5.28 30.11 0.16 -2.26 16 17 C 0.06 1.44 6.44 86.41 0.56 2.00 16 18 N -0.71 -22.83 6.18 -513.81 -3.18 -26.00 16 19 C 0.08 2.94 5.73 87.12 0.50 3.44 16 20 H 0.27 15.49 8.29 -92.70 -0.77 14.72 16 21 H 0.39 15.72 8.56 -92.71 -0.79 14.93 16 22 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.07 1.96 7.59 -2.39 -0.02 1.94 16 24 H 0.05 1.58 7.79 -2.39 -0.02 1.56 16 25 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.22 6.65 -2.39 -0.02 1.20 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.35 10.60 8.89 -89.69 -0.80 9.80 16 31 H 0.05 1.65 6.79 -2.39 -0.02 1.64 16 32 H 0.03 1.24 7.98 -2.39 -0.02 1.22 16 Total: -1.00 -76.86 259.53 -0.71 -77.58 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.46 Total: 31.27 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 2.97 Total: 5.73 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -5.19 Total: -114.96 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.06 Total: -43.47 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -76.86 -0.71 -77.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258069508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.193 kcal (2) G-P(sol) polarization free energy of solvation -76.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds