Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.62625 * 2 1 4 4 C 1.53780 * 113.61431 * 277.22362 * 3 2 1 5 5 C 1.53952 * 87.02322 * 220.05256 * 4 3 2 6 6 C 1.53776 * 87.11021 * 25.36022 * 5 4 3 7 7 O 1.43798 * 109.59347 * 239.75666 * 2 1 3 8 8 C 1.44783 * 104.79541 * 264.38680 * 7 2 1 9 9 C 1.54917 * 101.75698 * 323.95017 * 8 7 2 10 10 H 1.09000 * 110.69524 * 277.14841 * 9 8 7 11 11 C 1.50697 * 110.69605 * 153.93860 * 9 8 7 12 12 H 1.07999 * 120.00069 * 0.02562 * 11 9 8 13 13 C 1.37883 * 119.99633 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00109 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99679 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47045 * 89.99921 * 15 13 11 17 17 H 1.48498 * 109.47139 * 210.00177 * 15 13 11 18 18 H 1.48501 * 109.47010 * 329.99912 * 15 13 11 19 19 O 1.43370 * 109.63339 * 120.39457 * 2 1 3 20 20 H 1.08993 * 109.46859 * 303.11488 * 1 2 3 21 21 H 1.09000 * 109.46879 * 63.12098 * 1 2 3 22 22 H 1.09000 * 109.47106 * 183.11650 * 1 2 3 23 23 H 1.08999 * 112.85326 * 48.42092 * 3 2 1 24 24 H 1.09001 * 113.61655 * 334.56968 * 4 3 2 25 25 H 1.09002 * 113.61601 * 105.47211 * 4 3 2 26 26 H 1.09004 * 113.53514 * 270.81319 * 5 4 3 27 27 H 1.09000 * 113.67360 * 139.93237 * 5 4 3 28 28 H 1.09000 * 113.61700 * 220.08800 * 6 5 4 29 29 H 1.09001 * 113.69102 * 89.20486 * 6 5 4 30 30 H 1.08995 * 110.97753 * 205.82099 * 8 7 2 31 31 H 1.08999 * 110.98008 * 82.07349 * 8 7 2 32 32 H 0.97010 * 119.99958 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 2.0840 2.0808 -1.3978 5 6 3.4244 2.7136 -0.9819 6 6 3.5780 1.5480 0.0093 7 8 2.0123 -0.6823 -1.1703 8 6 2.2653 -2.0382 -0.7299 9 6 2.7885 -1.8098 0.7102 10 1 3.8509 -1.5661 0.6999 11 6 2.5263 -3.0192 1.5702 12 1 2.0335 -3.8837 1.1504 13 6 2.9165 -3.0224 2.8926 14 7 3.5170 -1.9699 3.4036 15 14 2.5921 -4.5218 3.9585 16 1 3.7486 -5.4494 3.8730 17 1 2.4027 -4.0955 5.3682 18 1 1.3672 -5.2126 3.4814 19 8 2.0118 -0.6832 1.1648 20 1 -0.3633 0.5614 0.8607 21 1 -0.3633 0.4646 -0.9167 22 1 -0.3633 -1.0261 0.0559 23 1 1.5583 2.0637 0.7514 24 1 2.1757 1.3564 -2.2071 25 1 1.2905 2.8086 -1.5679 26 1 3.3160 3.6853 -0.4999 27 1 4.1726 2.7143 -1.7745 28 1 3.9891 1.8463 0.9738 29 1 4.0790 0.6770 -0.4131 30 1 3.0245 -2.5146 -1.3500 31 1 1.3462 -2.6241 -0.7227 32 1 3.7919 -1.9723 4.3339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258818396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = -77.929161 kcal Electronic energy + Delta-G solvation = -15063.474576 eV Core-core repulsion = 12603.656543 eV Total energy + Delta-G solvation = -2459.818033 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77492 -37.23773 -33.80512 -32.63151 -30.70311 -27.93712 -25.31987 -25.04008 -24.48136 -21.14197 -20.48719 -18.71175 -16.74281 -16.20052 -15.58500 -14.93491 -14.59277 -13.83796 -13.70780 -12.88546 -12.53582 -12.20507 -11.94863 -11.85254 -11.75806 -11.45786 -11.35183 -11.04039 -10.94006 -10.56493 -10.35402 -10.11480 -9.97885 -9.79684 -9.27624 -8.91147 -8.62685 -8.02272 -6.10314 -4.25402 3.26022 3.33076 3.36194 4.34151 4.53652 4.91147 5.09131 5.20163 5.25383 5.36163 5.54667 5.77380 6.00936 6.01975 6.12254 6.14431 6.17080 6.21809 6.28249 6.35657 6.46821 6.56248 6.69188 6.70568 6.75457 6.87598 7.07085 7.47644 7.78701 8.14241 8.55153 8.87846 9.46591 10.97103 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.047243 B = 0.009590 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.533027 B = 2918.879535 C = 3116.506238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.254 3.746 3 C -0.110 4.110 4 C -0.128 4.128 5 C -0.145 4.145 6 C -0.118 4.118 7 O -0.391 6.391 8 C 0.019 3.981 9 C 0.189 3.811 10 H 0.042 0.958 11 C -0.540 4.540 12 H 0.065 0.935 13 C 0.080 3.920 14 N -0.861 5.861 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 O -0.358 6.358 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 5.396 -6.668 8.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.176 3.824 3 C -0.129 4.129 4 C -0.165 4.165 5 C -0.182 4.182 6 C -0.156 4.156 7 O -0.313 6.313 8 C -0.058 4.058 9 C 0.134 3.866 10 H 0.060 0.940 11 C -0.577 4.577 12 H 0.083 0.917 13 C -0.127 4.127 14 N -0.496 5.496 15 Si 0.723 3.277 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 O -0.279 6.279 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.084 5.634 -6.500 8.851 hybrid contribution -0.251 -0.899 0.700 1.167 sum -2.335 4.735 -5.800 7.843 Atomic orbital electron populations 1.22286 0.96067 1.02446 1.01245 1.22937 0.91466 0.90468 0.77551 1.22828 0.97486 0.95050 0.97543 1.22868 0.96869 0.99256 0.97522 1.22867 0.97864 0.98007 0.99493 1.22679 0.95862 0.98009 0.99012 1.89019 1.86268 1.22929 1.33060 1.24494 1.00016 0.83284 0.97967 1.21238 0.92141 0.85015 0.88157 0.94014 1.20995 1.41699 0.98756 0.96243 0.91689 1.25070 0.93675 0.95967 0.97990 1.70030 1.37213 1.28251 1.14117 0.86555 0.78815 0.82673 0.79702 1.20391 1.20983 1.19668 1.89218 1.69812 1.42935 1.25916 0.91874 0.92396 0.92238 0.88990 0.89235 0.92434 0.90907 0.92022 0.91741 0.89920 0.89662 0.92229 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.20 37.16 0.34 -2.70 16 2 C 0.25 5.38 0.93 -26.73 -0.02 5.35 16 3 C -0.11 -2.04 3.31 -89.81 -0.30 -2.33 16 4 C -0.13 -1.98 7.50 -25.83 -0.19 -2.17 16 5 C -0.14 -2.12 8.09 -25.83 -0.21 -2.33 16 6 C -0.12 -2.16 7.33 -25.92 -0.19 -2.35 16 7 O -0.39 -8.25 9.13 -59.03 -0.54 -8.78 16 8 C 0.02 0.40 7.33 38.17 0.28 0.68 16 9 C 0.19 4.92 3.43 -26.87 -0.09 4.83 16 10 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.54 -14.99 8.81 -34.44 -0.30 -15.29 16 12 H 0.06 1.74 7.76 -52.49 -0.41 1.33 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 14 N -0.86 -25.32 13.15 55.43 0.73 -24.59 16 15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 O -0.36 -9.34 10.16 -59.03 -0.60 -9.94 16 20 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 24 H 0.09 1.47 6.98 -51.93 -0.36 1.11 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.66 7.78 -51.93 -0.40 1.25 16 30 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.06 1.27 8.02 -51.93 -0.42 0.86 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 264.92 15.07 3.99 3.99 Total: -1.00 -29.68 264.92 -7.18 -36.85 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.95 Total: 0.54 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.79 Total: -14.18 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.73 Total: -24.59 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.14 Total: -18.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.68 -7.18 -36.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258818396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.074 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds