Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.62765 * 2 1 4 4 C 1.53783 * 113.61339 * 162.92985 * 3 2 1 5 5 C 1.53964 * 87.01707 * 220.04648 * 4 3 2 6 6 C 1.53778 * 87.10896 * 25.36578 * 5 4 3 7 7 O 1.43365 * 109.63575 * 239.60551 * 2 1 3 8 8 C 1.44189 * 107.29213 * 240.78755 * 7 2 1 9 9 C 1.54915 * 103.07470 * 21.43903 * 8 7 2 10 10 H 1.08995 * 110.98384 * 82.54242 * 9 8 7 11 11 C 1.50710 * 110.97633 * 206.29314 * 9 8 7 12 12 H 1.07997 * 119.99958 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99958 * 179.97438 * 11 9 8 14 14 N 1.31513 * 119.99680 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47210 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47206 * 120.00025 * 15 13 11 18 18 H 1.48502 * 109.47504 * 240.00506 * 15 13 11 19 19 O 1.43755 * 109.63290 * 120.24036 * 2 1 3 20 20 H 1.08998 * 109.47110 * 175.07094 * 1 2 3 21 21 H 1.09002 * 109.47340 * 55.07112 * 1 2 3 22 22 H 1.09000 * 109.47047 * 295.06819 * 1 2 3 23 23 H 1.08998 * 112.85020 * 294.12477 * 3 2 1 24 24 H 1.08993 * 113.61842 * 334.56449 * 4 3 2 25 25 H 1.08995 * 113.61426 * 105.47486 * 4 3 2 26 26 H 1.08995 * 113.53662 * 270.81078 * 5 4 3 27 27 H 1.08998 * 113.74158 * 139.94551 * 5 4 3 28 28 H 1.09006 * 113.61451 * 220.09174 * 6 5 4 29 29 H 1.08999 * 113.69245 * 89.19861 * 6 5 4 30 30 H 1.09002 * 110.69428 * 139.82968 * 8 7 2 31 31 H 1.08997 * 110.69792 * 263.04141 * 8 7 2 32 32 H 0.97011 * 119.99536 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 3.5195 1.5689 0.4136 5 6 3.1069 2.8270 1.1994 6 6 1.6967 2.2190 1.2804 7 8 2.0117 -0.6832 -1.1647 8 6 2.7886 -1.8096 -0.7102 9 6 2.2652 -2.0381 0.7299 10 1 1.3458 -2.6234 0.7228 11 6 3.3148 -2.6976 1.5871 12 1 4.2788 -2.9436 1.1669 13 6 3.0442 -2.9871 2.9077 14 7 1.8701 -2.6880 3.4191 15 14 4.3448 -3.8052 3.9699 16 1 5.5698 -4.0362 3.1628 17 1 4.6697 -2.9248 5.1208 18 1 3.8293 -5.1047 4.4708 19 8 2.0129 -0.6819 1.1697 20 1 -0.3633 -1.0238 -0.0883 21 1 -0.3634 0.5884 -0.8425 22 1 -0.3633 0.4354 0.9309 23 1 1.7994 1.9777 -0.9167 24 1 3.8677 0.7531 1.0471 25 1 4.1905 1.7745 -0.4204 26 1 3.1543 3.7430 0.6105 27 1 3.5984 2.9204 2.1678 28 1 0.8982 2.9485 1.1450 29 1 1.5442 1.5811 2.1510 30 1 2.5989 -2.6845 -1.3322 31 1 3.8509 -1.5660 -0.6998 32 1 1.6796 -2.8920 4.3482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258818412.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -79.335745 kcal Electronic energy + Delta-G solvation = -15133.158161 eV Core-core repulsion = 12673.279133 eV Total energy + Delta-G solvation = -2459.879027 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.73366 -37.26074 -33.82281 -32.63147 -30.70828 -27.92004 -25.42430 -24.78228 -24.59863 -21.19129 -20.46274 -18.63362 -16.94833 -15.89523 -15.34655 -15.03360 -14.55562 -14.30533 -13.44018 -13.03181 -12.54314 -12.23844 -12.02805 -11.79222 -11.64483 -11.41601 -11.21077 -11.06655 -10.97243 -10.54824 -10.32484 -10.11779 -9.91482 -9.74184 -9.27139 -8.81342 -8.64085 -8.20033 -6.15615 -4.29806 3.23502 3.31764 3.35364 4.31033 4.53538 4.94687 5.12523 5.21982 5.32660 5.39249 5.49316 5.81022 6.04258 6.08279 6.15085 6.17075 6.22350 6.24893 6.32239 6.40574 6.46244 6.60533 6.69327 6.77534 6.78655 6.98094 7.13091 7.42527 7.75375 8.09863 8.50066 8.80933 9.42145 10.92444 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.033292 B = 0.011184 C = 0.010110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.834850 B = 2502.995759 C = 2768.788376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.251 3.749 3 C -0.112 4.112 4 C -0.126 4.126 5 C -0.143 4.143 6 C -0.125 4.125 7 O -0.401 6.401 8 C 0.024 3.976 9 C 0.184 3.816 10 H 0.041 0.959 11 C -0.531 4.531 12 H 0.068 0.932 13 C 0.079 3.921 14 N -0.862 5.862 15 Si 0.897 3.103 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.282 1.282 19 O -0.350 6.350 20 H 0.057 0.943 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 6.411 -4.416 7.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.173 3.827 3 C -0.131 4.131 4 C -0.163 4.163 5 C -0.181 4.181 6 C -0.162 4.162 7 O -0.323 6.323 8 C -0.052 4.052 9 C 0.129 3.871 10 H 0.058 0.942 11 C -0.569 4.569 12 H 0.086 0.914 13 C -0.128 4.128 14 N -0.498 5.498 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.208 1.208 19 O -0.271 6.271 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.168 6.556 -4.252 7.816 hybrid contribution 0.539 -0.528 0.568 0.945 sum 0.371 6.027 -3.684 7.074 Atomic orbital electron populations 1.22259 0.95845 1.02225 1.01525 1.22962 0.91562 0.90410 0.77760 1.22798 0.97644 0.94616 0.98039 1.22863 0.95479 0.98330 0.99669 1.22814 0.97636 0.97281 1.00361 1.22819 0.96109 0.98619 0.98652 1.88681 1.69769 1.42900 1.30919 1.24287 0.95488 0.87539 0.97924 1.21418 0.96116 0.81294 0.88244 0.94152 1.20901 1.00225 1.39509 0.96224 0.91404 1.25076 0.95395 0.94308 0.97990 1.70034 1.21059 1.44546 1.14173 0.86470 0.81743 0.79016 0.80389 1.19457 1.20710 1.20753 1.89537 1.84590 1.24434 1.28524 0.92364 0.92758 0.91354 0.89453 0.88251 0.92680 0.91191 0.91796 0.92477 0.88820 0.90606 0.92082 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.99 37.15 0.33 -2.75 16 2 C 0.25 5.34 0.95 -26.73 -0.03 5.32 16 3 C -0.11 -2.05 3.38 -89.80 -0.30 -2.36 16 4 C -0.13 -2.28 7.52 -25.82 -0.19 -2.48 16 5 C -0.14 -2.22 8.09 -25.82 -0.21 -2.43 16 6 C -0.12 -2.10 6.92 -25.92 -0.18 -2.28 16 7 O -0.40 -8.79 10.87 -59.04 -0.64 -9.43 16 8 C 0.02 0.53 7.51 38.17 0.29 0.82 16 9 C 0.18 4.75 3.21 -26.87 -0.09 4.66 16 10 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 11 C -0.53 -14.55 8.83 -34.44 -0.30 -14.86 16 12 H 0.07 1.80 7.76 -52.49 -0.41 1.39 16 13 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 14 N -0.86 -24.95 13.21 55.43 0.73 -24.22 16 15 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 O -0.35 -8.86 8.70 -59.04 -0.51 -9.37 16 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.07 1.27 7.78 -51.93 -0.40 0.87 16 23 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 24 H 0.10 2.12 7.13 -51.93 -0.37 1.75 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.82 7.59 -51.93 -0.39 1.43 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.33 8.01 -51.93 -0.42 0.92 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 264.34 15.07 3.98 3.98 Total: -1.00 -29.04 264.34 -7.17 -36.21 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.93 Total: 1.23 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.78 Total: -14.28 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.73 Total: -24.22 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.15 Total: -18.80 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.04 -7.17 -36.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258818412.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.129 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds