Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.62765 * 2 1 4 4 C 1.53783 * 113.61339 * 162.92985 * 3 2 1 5 5 C 1.53964 * 87.01707 * 220.04648 * 4 3 2 6 6 C 1.53778 * 87.10896 * 25.36578 * 5 4 3 7 7 O 1.43365 * 109.63575 * 239.60551 * 2 1 3 8 8 C 1.44189 * 107.29213 * 240.78755 * 7 2 1 9 9 C 1.54915 * 103.07470 * 21.43903 * 8 7 2 10 10 H 1.08995 * 110.98384 * 82.54242 * 9 8 7 11 11 C 1.50710 * 110.97633 * 206.29314 * 9 8 7 12 12 H 1.07997 * 119.99958 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99958 * 179.97438 * 11 9 8 14 14 N 1.31513 * 119.99680 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47210 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47206 * 120.00025 * 15 13 11 18 18 H 1.48502 * 109.47504 * 240.00506 * 15 13 11 19 19 O 1.43755 * 109.63290 * 120.24036 * 2 1 3 20 20 H 1.08998 * 109.47110 * 175.07094 * 1 2 3 21 21 H 1.09002 * 109.47340 * 55.07112 * 1 2 3 22 22 H 1.09000 * 109.47047 * 295.06819 * 1 2 3 23 23 H 1.08998 * 112.85020 * 294.12477 * 3 2 1 24 24 H 1.08993 * 113.61842 * 334.56449 * 4 3 2 25 25 H 1.08995 * 113.61426 * 105.47486 * 4 3 2 26 26 H 1.08995 * 113.53662 * 270.81078 * 5 4 3 27 27 H 1.08998 * 113.74158 * 139.94551 * 5 4 3 28 28 H 1.09006 * 113.61451 * 220.09174 * 6 5 4 29 29 H 1.08999 * 113.69245 * 89.19861 * 6 5 4 30 30 H 1.09002 * 110.69428 * 139.82968 * 8 7 2 31 31 H 1.08997 * 110.69792 * 263.04141 * 8 7 2 32 32 H 0.97011 * 119.99536 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 3.5195 1.5689 0.4136 5 6 3.1069 2.8270 1.1994 6 6 1.6967 2.2190 1.2804 7 8 2.0117 -0.6832 -1.1647 8 6 2.7886 -1.8096 -0.7102 9 6 2.2652 -2.0381 0.7299 10 1 1.3458 -2.6234 0.7228 11 6 3.3148 -2.6976 1.5871 12 1 4.2788 -2.9436 1.1669 13 6 3.0442 -2.9871 2.9077 14 7 1.8701 -2.6880 3.4191 15 14 4.3448 -3.8052 3.9699 16 1 5.5698 -4.0362 3.1628 17 1 4.6697 -2.9248 5.1208 18 1 3.8293 -5.1047 4.4708 19 8 2.0129 -0.6819 1.1697 20 1 -0.3633 -1.0238 -0.0883 21 1 -0.3634 0.5884 -0.8425 22 1 -0.3633 0.4354 0.9309 23 1 1.7994 1.9777 -0.9167 24 1 3.8677 0.7531 1.0471 25 1 4.1905 1.7745 -0.4204 26 1 3.1543 3.7430 0.6105 27 1 3.5984 2.9204 2.1678 28 1 0.8982 2.9485 1.1450 29 1 1.5442 1.5811 2.1510 30 1 2.5989 -2.6845 -1.3322 31 1 3.8509 -1.5660 -0.6998 32 1 1.6796 -2.8920 4.3482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258818412.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -96.791483 kcal Electronic energy + Delta-G solvation = -15133.915098 eV Core-core repulsion = 12673.279133 eV Total energy + Delta-G solvation = -2460.635965 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.42175 -38.76288 -35.72019 -34.62996 -32.44465 -29.79771 -27.00119 -26.43431 -26.17234 -23.12817 -22.04281 -20.08778 -18.97486 -17.70122 -17.13729 -16.61527 -16.35634 -15.87043 -15.21543 -14.71846 -14.36373 -14.04192 -13.63443 -13.29629 -13.26685 -13.04565 -12.83727 -12.81951 -12.64009 -12.35568 -12.12440 -11.80654 -11.31207 -11.21246 -11.05230 -10.84487 -10.51078 -10.00526 -8.25467 -6.47196 1.39339 1.40877 1.53515 2.35518 2.78543 3.04480 3.56320 3.70179 3.90588 3.94864 4.01633 4.23777 4.33445 4.38695 4.54886 4.59707 4.74434 4.81276 4.85514 4.98989 4.99850 5.09042 5.13141 5.17026 5.28242 5.37420 5.43346 5.63213 5.74078 6.04525 6.56724 6.79820 7.29192 8.83796 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.033292 B = 0.011184 C = 0.010110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.834850 B = 2502.995759 C = 2768.788376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.236 3.764 3 C -0.113 4.113 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.123 4.123 7 O -0.402 6.402 8 C 0.035 3.965 9 C 0.179 3.821 10 H 0.009 0.991 11 C -0.551 4.551 12 H 0.072 0.928 13 C 0.027 3.973 14 N -0.901 5.901 15 Si 0.967 3.033 16 H -0.260 1.260 17 H -0.280 1.280 18 H -0.274 1.274 19 O -0.374 6.374 20 H 0.040 0.960 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.113 0.887 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 7.664 -5.084 9.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.159 3.841 3 C -0.131 4.131 4 C -0.171 4.171 5 C -0.164 4.164 6 C -0.160 4.160 7 O -0.324 6.324 8 C -0.042 4.042 9 C 0.123 3.877 10 H 0.026 0.974 11 C -0.588 4.588 12 H 0.090 0.910 13 C -0.176 4.176 14 N -0.538 5.538 15 Si 0.791 3.209 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.199 1.199 19 O -0.295 6.295 20 H 0.059 0.941 21 H 0.104 0.896 22 H 0.088 0.912 23 H 0.131 0.869 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.522 7.811 -4.935 9.254 hybrid contribution 0.277 -0.894 0.724 1.183 sum 0.799 6.917 -4.211 8.138 Atomic orbital electron populations 1.22235 0.94506 1.01788 1.02926 1.23436 0.92756 0.91658 0.76267 1.22919 0.97663 0.92778 0.99768 1.22788 0.95713 0.98560 1.00026 1.22798 0.95869 0.97232 1.00469 1.22736 0.98230 0.98567 0.96468 1.88652 1.69843 1.42769 1.31140 1.24168 0.95490 0.88473 0.96036 1.21259 0.94622 0.81456 0.90346 0.97370 1.21261 1.00659 1.39904 0.96931 0.91003 1.25959 0.97484 0.94841 0.99346 1.70160 1.23103 1.45964 1.14590 0.85377 0.79172 0.78000 0.78319 1.18342 1.20606 1.19918 1.89478 1.85133 1.24128 1.30744 0.94097 0.89631 0.91249 0.86857 0.92364 0.91184 0.87739 0.91809 0.89534 0.92366 0.88582 0.91805 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.92 8.99 71.98 0.65 -5.27 16 2 C 0.24 9.96 0.95 30.59 0.03 9.98 16 3 C -0.11 -3.91 3.38 -10.27 -0.03 -3.94 16 4 C -0.13 -4.66 7.52 31.18 0.23 -4.42 16 5 C -0.13 -3.58 8.09 31.18 0.25 -3.33 16 6 C -0.12 -3.91 6.92 31.12 0.22 -3.70 16 7 O -0.40 -17.29 10.87 -126.22 -1.37 -18.66 16 8 C 0.03 1.53 7.51 72.64 0.55 2.08 16 9 C 0.18 9.47 3.21 30.51 0.10 9.57 16 10 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 11 C -0.55 -30.74 8.83 25.60 0.23 -30.52 16 12 H 0.07 3.83 7.76 -2.91 -0.02 3.81 16 13 C 0.03 1.48 5.46 84.65 0.46 1.94 16 14 N -0.90 -53.59 13.21 21.45 0.28 -53.31 16 15 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 O -0.37 -19.43 8.70 -126.22 -1.10 -20.53 16 20 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.07 2.57 7.78 -2.39 -0.02 2.55 16 23 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 24 H 0.06 2.52 7.13 -2.39 -0.02 2.50 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 26 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.06 2.28 7.59 -2.39 -0.02 2.26 16 30 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.06 2.77 8.01 -2.39 -0.02 2.76 16 32 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -63.34 264.34 3.60 -59.75 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.08 Total: 15.07 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 2.67 Total: -27.60 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.28 Total: -53.31 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -2.47 Total: -39.19 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.34 3.60 -59.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258818412.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.046 kcal (2) G-P(sol) polarization free energy of solvation -63.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds