Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99889 * 2 1 4 4 H 1.48501 * 109.47345 * 269.99941 * 3 2 1 5 5 H 1.48500 * 109.47245 * 30.00642 * 3 2 1 6 6 H 1.48502 * 109.46976 * 149.99883 * 3 2 1 7 7 C 1.37880 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00252 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99659 * 180.02562 * 7 2 1 10 10 H 1.08991 * 109.77129 * 59.54567 * 9 7 2 11 11 C 1.53592 * 109.77970 * 299.02996 * 9 7 2 12 12 C 1.53001 * 109.60669 * 183.82281 * 11 9 7 13 13 O 1.43080 * 109.86137 * 56.60582 * 12 11 9 14 14 C 1.42665 * 113.53909 * 299.32252 * 13 12 11 15 15 H 1.08999 * 109.37206 * 302.52673 * 14 13 12 16 16 C 1.52940 * 110.66356 * 181.75279 * 14 13 12 17 17 C 1.53232 * 108.77341 * 182.49625 * 16 14 13 18 18 O 1.42821 * 109.82492 * 57.06831 * 17 16 14 19 19 C 1.43075 * 114.52432 * 299.83237 * 18 17 16 20 20 C 1.52866 * 108.94734 * 60.69981 * 19 18 17 21 21 H 1.09002 * 109.50552 * 61.19147 * 20 19 18 22 22 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.42948 * 63.77682 * 11 9 7 24 24 H 1.09004 * 109.41312 * 303.85365 * 11 9 7 25 25 H 1.09002 * 109.40403 * 296.48602 * 12 11 9 26 26 H 1.08999 * 109.40257 * 176.72662 * 12 11 9 27 27 H 1.08996 * 109.58564 * 62.71143 * 16 14 13 28 28 H 1.09001 * 109.70419 * 302.35488 * 16 14 13 29 29 H 1.09006 * 109.41716 * 296.95764 * 17 16 14 30 30 H 1.09002 * 109.41140 * 177.17472 * 17 16 14 31 31 H 1.08996 * 109.55791 * 300.85621 * 19 18 17 32 32 H 1.09000 * 109.55342 * 180.53858 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 1 3.8798 -0.6748 0.8847 11 6 4.0317 -0.4919 -1.2630 12 6 5.5587 -0.5775 -1.3060 13 8 5.9706 -1.9465 -1.2474 14 6 5.5569 -2.6155 -0.0571 15 1 5.9453 -2.0826 0.8108 16 6 6.0674 -4.0571 -0.0430 17 6 5.5476 -4.7520 1.2198 18 8 4.1212 -4.6885 1.2554 19 6 3.5861 -3.3617 1.2704 20 6 4.0250 -2.6350 -0.0008 21 1 3.6354 -3.1598 -0.8730 22 1 -0.4850 0.8400 0.0004 23 1 3.7270 0.5545 -1.2477 24 1 3.6157 -0.9783 -2.1454 25 1 5.9758 -0.0371 -0.4563 26 1 5.9206 -0.1297 -2.2315 27 1 7.1574 -4.0587 -0.0386 28 1 5.7049 -4.5840 -0.9257 29 1 5.9544 -4.2550 2.1005 30 1 5.8638 -5.7952 1.2155 31 1 3.9598 -2.8274 2.1438 32 1 2.4976 -3.4078 1.3071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -122.668046 kcal Electronic energy + Delta-G solvation = -15164.240359 eV Core-core repulsion = 12702.482302 eV Total energy + Delta-G solvation = -2461.758057 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26997 -38.69672 -36.14623 -33.78863 -33.48962 -31.44765 -28.39734 -25.91258 -25.04398 -23.37672 -21.83246 -21.09592 -18.90059 -17.61589 -17.42924 -16.79322 -16.31657 -16.01158 -15.90493 -15.28045 -14.87920 -14.61847 -14.22054 -13.95003 -13.15104 -13.10586 -12.66317 -12.64307 -12.32492 -12.21480 -11.81625 -11.70001 -11.46622 -11.18892 -10.98430 -10.77082 -10.46764 -10.12776 -8.30930 -6.35190 1.27975 1.33068 1.43367 2.30292 2.74196 2.96858 3.05934 3.76991 3.88259 3.94466 4.12861 4.17088 4.23540 4.32425 4.37524 4.50233 4.57678 4.63324 4.75057 4.87462 4.88875 4.95664 5.08811 5.16216 5.22598 5.30336 5.60113 5.66375 6.23458 6.26845 6.32678 6.70803 7.29864 8.85598 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.037012 B = 0.012345 C = 0.009889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.336679 B = 2267.542551 C = 2830.656239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.298 1.298 6 H -0.242 1.242 7 C -0.514 4.514 8 H 0.036 0.964 9 C 0.020 3.980 10 H 0.030 0.970 11 C -0.158 4.158 12 C 0.063 3.937 13 O -0.387 6.387 14 C 0.087 3.913 15 H 0.064 0.936 16 C -0.140 4.140 17 C 0.059 3.941 18 O -0.405 6.405 19 C 0.084 3.916 20 C -0.127 4.127 21 H 0.052 0.948 22 H 0.265 0.735 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.895 -3.425 1.360 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.185 4.185 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.166 1.166 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.001 3.999 10 H 0.048 0.952 11 C -0.196 4.196 12 C -0.013 4.013 13 O -0.307 6.307 14 C 0.030 3.970 15 H 0.082 0.918 16 C -0.177 4.177 17 C -0.017 4.017 18 O -0.325 6.325 19 C 0.007 3.993 20 C -0.146 4.146 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.076 0.924 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.744 -3.587 1.219 15.223 hybrid contribution -0.700 1.283 -0.070 1.463 sum 14.044 -2.304 1.149 14.278 Atomic orbital electron populations 1.70051 1.08243 1.28002 1.52586 1.25890 0.95410 1.03016 0.94220 0.85891 0.79396 0.78763 0.78802 1.19200 1.22598 1.16588 1.21252 0.90946 0.92993 1.49951 0.94599 1.19152 0.94164 0.92688 0.93903 0.95152 1.22592 0.96627 0.99993 1.00348 1.22689 0.93060 0.82534 1.03052 1.87831 1.76671 1.24626 1.41525 1.22231 0.92451 0.94524 0.87827 0.91797 1.22178 1.02775 0.92681 1.00097 1.22807 0.80015 1.02828 0.96071 1.87872 1.22109 1.27638 1.94850 1.22386 0.98808 0.82166 0.95902 1.22149 0.96262 0.97294 0.98870 0.92925 0.92582 0.93035 0.92801 0.92379 0.87073 0.87808 0.91395 0.91696 0.85924 0.92447 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 2 C 0.01 0.67 5.45 84.66 0.46 1.14 16 3 Si 0.94 43.76 24.39 68.60 1.67 45.43 16 4 H -0.27 -11.74 6.90 99.48 0.69 -11.05 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.24 -10.16 6.53 99.48 0.65 -9.52 16 7 C -0.51 -28.81 8.51 25.60 0.22 -28.59 16 8 H 0.04 2.25 7.20 -2.91 -0.02 2.23 16 9 C 0.02 0.90 1.32 -11.35 -0.01 0.88 16 10 H 0.03 1.37 7.18 -2.39 -0.02 1.35 16 11 C -0.16 -6.51 4.88 30.79 0.15 -6.36 16 12 C 0.06 2.05 6.83 71.98 0.49 2.55 16 13 O -0.39 -13.20 10.49 -148.98 -1.56 -14.76 16 14 C 0.09 2.84 2.50 30.68 0.08 2.91 16 15 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 16 C -0.14 -3.62 5.86 30.65 0.18 -3.44 16 17 C 0.06 1.44 6.84 72.06 0.49 1.93 16 18 O -0.41 -13.89 10.75 -148.98 -1.60 -15.49 16 19 C 0.08 3.21 5.96 71.94 0.43 3.64 16 20 C -0.13 -5.08 1.73 -10.75 -0.02 -5.10 16 21 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 23 H 0.05 2.15 3.53 -2.39 -0.01 2.14 16 24 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 3.46 6.97 -2.39 -0.02 3.44 16 Total: -1.00 -65.32 244.61 2.29 -63.03 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.02 Total: 11.02 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 2.47 Total: -30.43 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.30 Total: -58.80 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -3.16 Total: -30.26 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.67 Total: 45.43 kcal Total: -65.32 2.29 -63.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.638 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds