Wall clock time and date at job start Mon Mar 30 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99645 * 2 1 4 4 H 1.48498 * 109.47313 * 270.00493 * 3 2 1 5 5 H 1.48501 * 109.47022 * 30.00451 * 3 2 1 6 6 H 1.48502 * 109.46568 * 150.00588 * 3 2 1 7 7 C 1.37874 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00291 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99619 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.59136 * 59.81350 * 9 7 2 11 11 C 1.52378 * 109.66944 * 300.23986 * 9 7 2 12 12 C 1.53101 * 109.22243 * 183.13341 * 11 9 7 13 13 O 1.42885 * 109.38535 * 57.53006 * 12 11 9 14 14 C 1.42881 * 114.19544 * 298.77548 * 13 12 11 15 15 H 1.09001 * 109.57997 * 300.69919 * 14 13 12 16 16 C 1.53198 * 109.61509 * 180.41027 * 14 13 12 17 17 C 1.53085 * 109.14424 * 297.21678 * 16 14 13 18 18 O 1.42904 * 109.41756 * 302.33791 * 17 16 14 19 19 C 1.42905 * 114.11623 * 61.14094 * 18 17 16 20 20 C 1.53042 * 109.43736 * 298.93800 * 19 18 17 21 21 H 1.08996 * 109.54616 * 297.54911 * 20 19 18 22 22 H 0.97003 * 120.00235 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.64894 * 63.10160 * 11 9 7 24 24 H 1.08998 * 109.35327 * 302.98167 * 11 9 7 25 25 H 1.09006 * 109.48774 * 297.55733 * 12 11 9 26 26 H 1.09003 * 109.48793 * 177.50337 * 12 11 9 27 27 H 1.09002 * 109.52241 * 57.11416 * 16 14 13 28 28 H 1.08995 * 109.52520 * 177.24442 * 16 14 13 29 29 H 1.08998 * 109.48543 * 182.35392 * 17 16 14 30 30 H 1.09007 * 109.48152 * 62.31441 * 17 16 14 31 31 H 1.08998 * 109.47613 * 58.93305 * 19 18 17 32 32 H 1.09000 * 109.47679 * 178.94503 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8773 -0.6778 0.8865 11 6 4.0239 -0.4710 -1.2408 12 6 5.5528 -0.5449 -1.2715 13 8 5.9620 -1.9138 -1.2527 14 6 5.5528 -2.6314 -0.0869 15 1 5.9664 -2.1526 0.8007 16 6 6.0530 -4.0769 -0.1708 17 6 5.4063 -4.7628 -1.3770 18 8 3.9840 -4.7056 -1.2499 19 6 3.4540 -3.3791 -1.2128 20 6 4.0233 -2.6368 -0.0016 21 1 3.7109 -3.1391 0.9139 22 1 -0.4851 0.8401 0.0004 23 1 3.7099 0.5723 -1.2126 24 1 3.6180 -0.9499 -2.1318 25 1 5.9592 -0.0319 -0.3997 26 1 5.9218 -0.0675 -2.1793 27 1 7.1368 -4.0812 -0.2871 28 1 5.7824 -4.6096 0.7408 29 1 5.7260 -5.8040 -1.4179 30 1 5.7102 -4.2528 -2.2913 31 1 3.7307 -2.8514 -2.1256 32 1 2.3677 -3.4238 -1.1340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:24 Heat of formation + Delta-G solvation = -97.662005 kcal Electronic energy + Delta-G solvation = -15353.367949 eV Core-core repulsion = 12892.694235 eV Total energy + Delta-G solvation = -2460.673714 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98424 -36.91617 -34.48759 -32.13822 -31.78497 -29.67845 -26.55711 -24.41685 -23.57055 -22.44736 -20.54315 -18.49699 -16.84659 -15.96181 -15.72239 -15.47013 -15.23785 -14.66905 -13.97663 -13.50594 -13.23945 -12.74478 -12.44862 -12.36977 -11.88580 -11.69335 -11.23615 -11.01667 -10.64625 -10.31257 -10.18858 -9.93202 -9.81999 -9.69751 -9.14883 -8.80209 -8.59991 -8.45694 -6.13304 -4.13252 3.20043 3.30251 3.33165 4.15809 4.33520 4.45088 5.15024 5.16051 5.21497 5.41300 5.57914 5.63560 5.71764 5.76288 5.84788 5.96388 6.00729 6.14563 6.16269 6.25304 6.25912 6.56549 6.65060 6.75269 6.86446 7.03839 7.39205 7.66550 7.68546 7.78382 8.44394 8.89865 9.48466 10.99433 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.042778 B = 0.012250 C = 0.010342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.378256 B = 2285.193211 C = 2706.638368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.020 3.980 10 H 0.027 0.973 11 C -0.159 4.159 12 C 0.060 3.940 13 O -0.384 6.384 14 C 0.088 3.912 15 H 0.054 0.946 16 C -0.144 4.144 17 C 0.065 3.935 18 O -0.393 6.393 19 C 0.077 3.923 20 C -0.127 4.127 21 H 0.078 0.922 22 H 0.264 0.736 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 -3.861 -1.545 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.001 3.999 10 H 0.045 0.955 11 C -0.197 4.197 12 C -0.016 4.016 13 O -0.303 6.303 14 C 0.030 3.970 15 H 0.072 0.928 16 C -0.182 4.182 17 C -0.012 4.012 18 O -0.312 6.312 19 C 0.002 3.998 20 C -0.146 4.146 21 H 0.096 0.904 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.319 -3.998 -1.678 12.121 hybrid contribution 0.384 1.558 0.240 1.622 sum 11.703 -2.440 -1.439 12.041 Atomic orbital electron populations 1.69892 1.06226 1.26984 1.50428 1.25016 0.94681 0.98961 0.94408 0.86883 0.79856 0.83814 0.77916 1.20529 1.22403 1.19254 1.21011 0.88347 0.94613 1.51208 0.90312 1.18987 0.97275 0.90448 0.93173 0.95492 1.22543 0.93787 1.00928 1.02418 1.22623 0.95961 0.82382 1.00679 1.87762 1.77207 1.23041 1.42310 1.22165 0.95043 0.91745 0.88060 0.92850 1.22184 1.00755 0.94763 1.00504 1.22385 0.82119 0.99873 0.96828 1.87878 1.19887 1.29016 1.94451 1.22687 0.99323 0.81002 0.96836 1.22131 0.93414 0.99206 0.99896 0.90392 0.92589 0.92664 0.90980 0.94090 0.89941 0.90969 0.90115 0.89930 0.92918 0.93031 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 3 Si 0.88 21.42 24.34 -169.99 -4.14 17.28 16 4 H -0.28 -6.54 6.90 56.52 0.39 -6.15 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.18 6.52 56.52 0.37 -5.82 16 7 C -0.51 -13.88 8.45 -34.44 -0.29 -14.17 16 8 H 0.08 2.29 6.76 -52.49 -0.35 1.94 16 9 C 0.02 0.46 1.52 -92.04 -0.14 0.32 16 10 H 0.03 0.64 7.19 -51.93 -0.37 0.26 16 11 C -0.16 -3.35 4.48 -27.00 -0.12 -3.48 16 12 C 0.06 1.07 6.85 37.21 0.25 1.32 16 13 O -0.38 -6.92 9.36 -35.23 -0.33 -7.25 16 14 C 0.09 1.52 2.89 -26.54 -0.08 1.44 16 15 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 16 C -0.14 -2.10 5.87 -26.58 -0.16 -2.25 16 17 C 0.07 0.99 6.69 37.20 0.25 1.24 16 18 O -0.39 -7.37 10.77 -35.23 -0.38 -7.75 16 19 C 0.08 1.55 5.41 37.18 0.20 1.76 16 20 C -0.13 -2.56 2.23 -90.46 -0.20 -2.76 16 21 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.06 1.21 3.35 -51.93 -0.17 1.04 16 24 H 0.07 1.54 6.60 -51.93 -0.34 1.20 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.82 7.82 -51.92 -0.41 0.41 16 31 H 0.05 1.05 6.13 -51.93 -0.32 0.73 16 32 H 0.11 2.31 6.55 -51.93 -0.34 1.97 16 LS Contribution 238.48 15.07 3.59 3.59 Total: -1.00 -29.21 238.48 -5.31 -34.52 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.45 Total: 0.41 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.38 Total: -14.67 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.71 Total: -15.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.21 -5.31 -34.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.146 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds