Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46801 * 264.77941 * 3 2 1 5 5 H 1.48500 * 109.47140 * 24.77284 * 3 2 1 6 6 H 1.48494 * 109.47535 * 144.77756 * 3 2 1 7 7 C 1.37876 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00257 * 5.48102 * 7 2 1 9 9 C 1.50702 * 119.99764 * 185.48009 * 7 2 1 10 10 H 1.09001 * 109.48866 * 335.26627 * 9 7 2 11 11 C 1.53071 * 109.51177 * 95.32892 * 9 7 2 12 12 O 1.43037 * 109.17296 * 176.94534 * 11 9 7 13 13 C 1.42978 * 113.65426 * 301.11541 * 12 11 9 14 14 C 1.53107 * 109.37290 * 58.73974 * 13 12 11 15 15 H 1.08999 * 109.54939 * 63.47359 * 14 13 12 16 16 C 1.53071 * 109.21260 * 183.70576 * 14 13 12 17 17 N 1.46923 * 109.47689 * 177.85546 * 16 14 13 18 18 C 1.46966 * 110.80647 * 300.59675 * 17 16 14 19 19 C 1.53025 * 109.27937 * 59.50138 * 18 17 16 20 20 N 1.46981 * 109.46573 * 301.48098 * 19 18 17 21 21 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.52597 * 296.85738 * 11 9 7 23 23 H 1.09000 * 109.51677 * 56.97569 * 11 9 7 24 24 H 1.09006 * 109.48662 * 178.69849 * 13 12 11 25 25 H 1.08996 * 109.49605 * 298.76567 * 13 12 11 26 26 H 1.08996 * 109.47058 * 297.85990 * 16 14 13 27 27 H 1.09004 * 109.46512 * 57.85606 * 16 14 13 28 28 H 1.00901 * 110.99900 * 176.78698 * 17 16 14 29 29 H 1.09001 * 109.50510 * 299.56203 * 18 17 16 30 30 H 1.09002 * 109.50640 * 179.44323 * 18 17 16 31 31 H 1.08999 * 109.47104 * 181.47991 * 19 18 17 32 32 H 1.08997 * 109.47149 * 61.47960 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3958 2.6820 0.5867 6 1 3.4872 1.4746 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4682 -2.1272 -0.0884 9 6 3.5063 -1.1970 0.1252 10 1 3.9025 -0.2451 -0.2286 11 6 3.8973 -1.3998 1.5912 12 8 5.3223 -1.4728 1.6915 13 6 5.8982 -2.5304 0.9209 14 6 5.5269 -2.3453 -0.5529 15 1 5.9606 -1.4169 -0.9245 16 6 6.0667 -3.5282 -1.3607 17 7 5.6695 -3.3824 -2.7677 18 6 4.2062 -3.3355 -2.8949 19 6 3.6669 -2.1498 -2.0917 20 7 4.0636 -2.2912 -0.6836 21 1 -0.4850 0.8400 0.0004 22 1 3.5328 -0.5614 2.1847 23 1 3.4573 -2.3261 1.9606 24 1 6.9828 -2.5094 1.0279 25 1 5.5161 -3.4880 1.2746 26 1 7.1542 -3.5500 -1.2906 27 1 5.6582 -4.4569 -0.9622 28 1 6.0579 -4.1235 -3.3317 29 1 3.7775 -4.2608 -2.5100 30 1 3.9356 -3.2174 -3.9442 31 1 2.5795 -2.1276 -2.1625 32 1 4.0762 -1.2228 -2.4932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259743446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = -32.617816 kcal Electronic energy + Delta-G solvation = -15188.732283 eV Core-core repulsion = 12763.171848 eV Total energy + Delta-G solvation = -2425.560435 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.42310 -36.67262 -34.15528 -32.33473 -31.32648 -29.45343 -25.86443 -24.59961 -24.30754 -21.56756 -19.99244 -19.16194 -16.97521 -16.41565 -15.59431 -15.18972 -14.57538 -14.39277 -14.15219 -13.71291 -13.43572 -12.94787 -12.88492 -12.42751 -11.60912 -11.30727 -11.17357 -10.93582 -10.80284 -10.66453 -10.15734 -9.85404 -9.76495 -9.42594 -8.85663 -8.59942 -8.26599 -7.40547 -6.19555 -4.20643 3.22721 3.31663 3.36504 4.32169 4.38939 4.54483 4.63993 5.12123 5.31391 5.43610 5.46100 5.68067 5.76662 5.85805 5.88763 5.92731 6.11632 6.27207 6.34918 6.44793 6.57819 6.61552 6.83877 6.98729 7.19891 7.35577 7.51164 7.87089 7.89511 7.99354 8.54525 8.90416 9.43251 10.92389 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.013040 C = 0.010716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.320855 B = 2146.648328 C = 2612.171994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.868 3.132 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.083 0.917 9 C 0.155 3.845 10 H 0.011 0.989 11 C 0.069 3.931 12 O -0.402 6.402 13 C 0.075 3.925 14 C 0.044 3.956 15 H 0.046 0.954 16 C 0.069 3.931 17 N -0.692 5.692 18 C 0.058 3.942 19 C 0.068 3.932 20 N -0.524 5.524 21 H 0.266 0.734 22 H 0.087 0.913 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.335 0.665 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.234 -5.404 -2.563 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.546 4.546 8 H 0.101 0.899 9 C 0.048 3.952 10 H 0.029 0.971 11 C -0.008 4.008 12 O -0.321 6.321 13 C -0.003 4.003 14 C -0.066 4.066 15 H 0.063 0.937 16 C -0.061 4.061 17 N -0.323 5.323 18 C -0.071 4.071 19 C -0.060 4.060 20 N -0.250 5.250 21 H 0.076 0.924 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.152 0.848 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 10.031 -4.907 -2.263 11.394 hybrid contribution 0.285 0.616 -0.388 0.782 sum 10.316 -4.290 -2.651 11.483 Atomic orbital electron populations 1.69882 1.06153 1.27218 1.49433 1.25007 0.94733 0.98769 0.94127 0.86980 0.80441 0.83935 0.79108 1.20115 1.21169 1.18729 1.20760 0.87916 0.94918 1.51007 0.89909 1.20328 0.96498 0.88309 0.90102 0.97112 1.23194 0.77773 1.01364 0.98467 1.87884 1.23022 1.52488 1.68659 1.22450 0.97407 0.91031 0.89427 1.22336 0.91175 0.97483 0.95623 0.93655 1.21879 0.98992 0.97049 0.88135 1.60519 1.11123 1.51546 1.09123 1.22100 0.86742 0.98669 0.99625 1.21986 1.01880 0.95011 0.87167 1.62500 1.06019 1.47526 1.08938 0.92362 0.89480 0.92904 0.89785 0.93116 0.91072 0.94513 0.84768 0.94550 0.90959 0.88349 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 21.36 27.01 -169.99 -4.59 16.76 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.37 6.79 56.52 0.38 -5.99 16 7 C -0.51 -13.82 7.49 -34.44 -0.26 -14.07 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.15 3.73 1.63 -68.75 -0.11 3.62 16 10 H 0.01 0.29 5.26 -51.93 -0.27 0.01 16 11 C 0.07 1.54 6.27 37.19 0.23 1.78 16 12 O -0.40 -8.40 10.83 -35.23 -0.38 -8.79 16 13 C 0.07 1.30 6.27 37.21 0.23 1.53 16 14 C 0.04 0.81 2.49 -67.56 -0.17 0.64 16 15 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 16 C 0.07 1.03 5.98 -3.77 -0.02 1.01 16 17 N -0.69 -10.18 6.91 -113.66 -0.78 -10.97 16 18 C 0.06 0.93 6.72 -3.77 -0.03 0.91 16 19 C 0.07 1.38 5.33 -3.77 -0.02 1.36 16 20 N -0.52 -11.22 4.50 -219.67 -0.99 -12.21 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 23 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.34 3.93 8.90 -39.29 -0.35 3.58 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 2.20 6.92 -51.93 -0.36 1.84 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 250.72 15.07 3.78 3.78 Total: -1.00 -29.69 250.72 -7.22 -36.91 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.78 Total: 1.16 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.24 Total: -1.18 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -1.00 Total: -48.65 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.38 Total: -8.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.69 -7.22 -36.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.288 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds