Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46801 * 264.77941 * 3 2 1 5 5 H 1.48500 * 109.47140 * 24.77284 * 3 2 1 6 6 H 1.48494 * 109.47535 * 144.77756 * 3 2 1 7 7 C 1.37876 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00257 * 5.48102 * 7 2 1 9 9 C 1.50702 * 119.99764 * 185.48009 * 7 2 1 10 10 H 1.09001 * 109.48866 * 335.26627 * 9 7 2 11 11 C 1.53071 * 109.51177 * 95.32892 * 9 7 2 12 12 O 1.43037 * 109.17296 * 176.94534 * 11 9 7 13 13 C 1.42978 * 113.65426 * 301.11541 * 12 11 9 14 14 C 1.53107 * 109.37290 * 58.73974 * 13 12 11 15 15 H 1.08999 * 109.54939 * 63.47359 * 14 13 12 16 16 C 1.53071 * 109.21260 * 183.70576 * 14 13 12 17 17 N 1.46923 * 109.47689 * 177.85546 * 16 14 13 18 18 C 1.46966 * 110.80647 * 300.59675 * 17 16 14 19 19 C 1.53025 * 109.27937 * 59.50138 * 18 17 16 20 20 N 1.46981 * 109.46573 * 301.48098 * 19 18 17 21 21 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.52597 * 296.85738 * 11 9 7 23 23 H 1.09000 * 109.51677 * 56.97569 * 11 9 7 24 24 H 1.09006 * 109.48662 * 178.69849 * 13 12 11 25 25 H 1.08996 * 109.49605 * 298.76567 * 13 12 11 26 26 H 1.08996 * 109.47058 * 297.85990 * 16 14 13 27 27 H 1.09004 * 109.46512 * 57.85606 * 16 14 13 28 28 H 1.00901 * 110.99900 * 176.78698 * 17 16 14 29 29 H 1.09001 * 109.50510 * 299.56203 * 18 17 16 30 30 H 1.09002 * 109.50640 * 179.44323 * 18 17 16 31 31 H 1.08999 * 109.47104 * 181.47991 * 19 18 17 32 32 H 1.08997 * 109.47149 * 61.47960 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3958 2.6820 0.5867 6 1 3.4872 1.4746 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4682 -2.1272 -0.0884 9 6 3.5063 -1.1970 0.1252 10 1 3.9025 -0.2451 -0.2286 11 6 3.8973 -1.3998 1.5912 12 8 5.3223 -1.4728 1.6915 13 6 5.8982 -2.5304 0.9209 14 6 5.5269 -2.3453 -0.5529 15 1 5.9606 -1.4169 -0.9245 16 6 6.0667 -3.5282 -1.3607 17 7 5.6695 -3.3824 -2.7677 18 6 4.2062 -3.3355 -2.8949 19 6 3.6669 -2.1498 -2.0917 20 7 4.0636 -2.2912 -0.6836 21 1 -0.4850 0.8400 0.0004 22 1 3.5328 -0.5614 2.1847 23 1 3.4573 -2.3261 1.9606 24 1 6.9828 -2.5094 1.0279 25 1 5.5161 -3.4880 1.2746 26 1 7.1542 -3.5500 -1.2906 27 1 5.6582 -4.4569 -0.9622 28 1 6.0579 -4.1235 -3.3317 29 1 3.7775 -4.2608 -2.5100 30 1 3.9356 -3.2174 -3.9442 31 1 2.5795 -2.1276 -2.1625 32 1 4.0762 -1.2228 -2.4932 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259743446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = -57.663818 kcal Electronic energy + Delta-G solvation = -15189.818359 eV Core-core repulsion = 12763.171848 eV Total energy + Delta-G solvation = -2426.646511 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.99520 -38.14797 -35.92152 -34.21262 -32.85654 -31.15104 -27.62441 -26.27355 -25.77532 -23.18249 -21.64083 -20.72212 -19.07297 -17.85107 -17.22942 -16.70315 -16.31845 -16.03721 -15.69999 -15.30984 -14.85781 -14.69125 -14.50000 -14.24578 -13.29896 -13.00118 -12.78933 -12.61738 -12.32774 -12.29337 -11.93259 -11.83113 -11.35904 -11.25475 -10.88048 -10.42424 -9.47284 -9.12506 -8.37641 -6.41814 1.25365 1.29510 1.39250 2.24897 2.81979 3.03261 3.11862 3.27080 3.96688 4.01361 4.13922 4.25533 4.33679 4.39641 4.42600 4.58000 4.63725 4.76245 4.81624 4.85776 4.97200 5.01391 5.14105 5.22113 5.41522 5.91525 5.94948 6.17228 6.28716 6.50635 6.61284 6.68072 7.24824 8.78159 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.013040 C = 0.010716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.320855 B = 2146.648328 C = 2612.171994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.029 3.971 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.502 4.502 8 H 0.043 0.957 9 C 0.157 3.843 10 H -0.004 1.004 11 C 0.077 3.923 12 O -0.409 6.409 13 C 0.069 3.931 14 C 0.039 3.961 15 H 0.028 0.972 16 C 0.075 3.925 17 N -0.694 5.694 18 C 0.069 3.931 19 C 0.068 3.932 20 N -0.533 5.533 21 H 0.269 0.731 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.125 0.875 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.042 0.958 28 H 0.359 0.641 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.857 -5.987 -2.885 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.049 3.951 10 H 0.014 0.986 11 C 0.000 4.000 12 O -0.328 6.328 13 C -0.008 4.008 14 C -0.070 4.070 15 H 0.046 0.954 16 C -0.054 4.054 17 N -0.328 5.328 18 C -0.060 4.060 19 C -0.061 4.061 20 N -0.259 5.259 21 H 0.079 0.921 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.060 0.940 28 H 0.179 0.821 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 12.686 -5.518 -2.597 14.076 hybrid contribution -0.498 0.697 -0.319 0.914 sum 12.188 -4.822 -2.916 13.428 Atomic orbital electron populations 1.69997 1.07697 1.28219 1.51297 1.25684 0.95347 1.02004 0.94013 0.86031 0.79434 0.80106 0.79191 1.19880 1.20290 1.18022 1.20801 0.89758 0.93350 1.50147 0.93823 1.20182 0.94358 0.88734 0.91776 0.98642 1.22892 0.79203 1.01038 0.96911 1.87865 1.21503 1.54045 1.69402 1.22798 0.99557 0.90357 0.88112 1.22520 0.88710 0.98540 0.97253 0.95352 1.21884 1.00870 0.95175 0.87503 1.60434 1.09824 1.52915 1.09577 1.21931 0.87875 0.96342 0.99880 1.21941 1.00126 0.96539 0.87459 1.62448 1.08501 1.45870 1.09050 0.92125 0.90088 0.93138 0.85688 0.92190 0.87547 0.93996 0.82147 0.94513 0.88884 0.91600 0.97098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.96 21.45 0.30 -56.41 16 2 C 0.03 1.67 5.47 84.65 0.46 2.13 16 3 Si 0.93 44.69 27.01 68.60 1.85 46.54 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.97 6.79 99.48 0.68 -11.30 16 7 C -0.50 -28.28 7.49 25.60 0.19 -28.09 16 8 H 0.04 2.75 8.06 -2.91 -0.02 2.72 16 9 C 0.16 7.65 1.63 44.17 0.07 7.72 16 10 H 0.00 -0.21 5.26 -2.39 -0.01 -0.22 16 11 C 0.08 3.42 6.27 72.01 0.45 3.87 16 12 O -0.41 -16.30 10.83 -148.98 -1.61 -17.92 16 13 C 0.07 2.17 6.27 72.02 0.45 2.62 16 14 C 0.04 1.35 2.49 44.95 0.11 1.46 16 15 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 16 C 0.08 1.94 5.98 86.32 0.52 2.45 16 17 N -0.69 -18.00 6.91 -513.50 -3.55 -21.55 16 18 C 0.07 2.10 6.72 86.30 0.58 2.68 16 19 C 0.07 2.77 5.33 86.30 0.46 3.23 16 20 N -0.53 -22.61 4.50 -848.90 -3.82 -26.43 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 22 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 23 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.13 2.94 8.14 -2.38 -0.02 2.93 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.36 6.84 8.90 -89.69 -0.80 6.04 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.07 3.07 6.92 -2.39 -0.02 3.05 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -65.33 250.72 -3.26 -68.59 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.27 Total: 9.09 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 3.30 Total: -1.91 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -7.07 Total: -104.39 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.61 Total: -17.92 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.85 Total: 46.54 kcal Total: -65.33 -3.26 -68.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.921 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds