Wall clock time and date at job start Mon Mar 30 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08999 * 109.49523 * 300.04666 * 9 7 2 11 11 C 1.53072 * 109.49010 * 60.11629 * 9 7 2 12 12 O 1.43034 * 109.17078 * 62.99501 * 11 9 7 13 13 C 1.42980 * 113.65098 * 58.89362 * 12 11 9 14 14 C 1.53104 * 109.37577 * 301.25209 * 13 12 11 15 15 H 1.08995 * 109.75072 * 296.38762 * 14 13 12 16 16 C 1.53071 * 109.21479 * 176.28431 * 14 13 12 17 17 N 1.46923 * 109.46327 * 182.10208 * 16 14 13 18 18 C 1.46975 * 110.80295 * 59.41121 * 17 16 14 19 19 C 1.53020 * 109.28638 * 300.50315 * 18 17 16 20 20 N 1.46984 * 109.46030 * 58.51655 * 19 18 17 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.52166 * 182.89557 * 11 9 7 23 23 H 1.08997 * 109.52136 * 303.08201 * 11 9 7 24 24 H 1.09007 * 109.48683 * 181.28570 * 13 12 11 25 25 H 1.09001 * 109.50343 * 61.23737 * 13 12 11 26 26 H 1.09006 * 109.46474 * 62.11243 * 16 14 13 27 27 H 1.08994 * 109.47242 * 302.10936 * 16 14 13 28 28 H 1.00902 * 111.00317 * 295.59418 * 17 16 14 29 29 H 1.08994 * 109.50285 * 180.55980 * 18 17 16 30 30 H 1.09000 * 109.53674 * 60.46491 * 18 17 16 31 31 H 1.09005 * 109.47519 * 298.52360 * 19 18 17 32 32 H 1.08996 * 109.47568 * 178.51235 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6273 -2.5551 0.8974 11 6 0.3677 -2.5844 -1.2420 12 8 1.1981 -2.5822 -2.4067 13 6 2.1363 -3.6604 -2.4442 14 6 3.0378 -3.5926 -1.2086 15 1 3.6237 -2.6737 -1.2301 16 6 3.9788 -4.7999 -1.2046 17 7 4.8121 -4.7671 0.0050 18 6 3.9778 -4.7981 1.2146 19 6 3.0405 -3.5885 1.2132 20 7 2.2061 -3.6171 0.0035 21 1 -0.4850 0.8401 0.0004 22 1 -0.2160 -3.5045 -1.2128 23 1 -0.3040 -1.7265 -1.2719 24 1 2.7463 -3.5806 -3.3441 25 1 1.6000 -4.6094 -2.4515 26 1 4.6178 -4.7654 -2.0870 27 1 3.3917 -5.7182 -1.2167 28 1 5.4186 -3.9608 0.0046 29 1 4.6158 -4.7629 2.0977 30 1 3.3886 -5.7150 1.2277 31 1 3.6301 -2.6718 1.2263 32 1 2.4019 -3.6226 2.0959 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259743450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:02 Heat of formation + Delta-G solvation = -32.590543 kcal Electronic energy + Delta-G solvation = -15363.271499 eV Core-core repulsion = 12937.712247 eV Total energy + Delta-G solvation = -2425.559252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38390 -36.47078 -33.89851 -32.18757 -31.09673 -28.69471 -25.49550 -24.56268 -23.95469 -21.92497 -20.37122 -19.24865 -16.38039 -15.78939 -15.29646 -14.88220 -14.66810 -14.35688 -13.78379 -13.70726 -13.28280 -12.87840 -12.62779 -11.46705 -11.29999 -11.26991 -11.04994 -10.82547 -10.72642 -10.67855 -10.41040 -9.94633 -9.80548 -9.40802 -8.84349 -8.36694 -7.86145 -7.30133 -6.08367 -4.18243 3.23489 3.31875 3.34303 4.35526 4.59767 4.78517 4.99114 5.21625 5.52318 5.66560 5.68429 5.74359 5.84141 5.96820 6.02450 6.21025 6.31943 6.34798 6.55839 6.63819 6.76324 6.86504 7.10076 7.27196 7.46983 7.63469 7.76395 7.94009 8.09444 8.14906 8.43973 8.83938 9.48435 10.93927 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.012762 C = 0.011111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.077820 B = 2193.404715 C = 2519.391665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.176 3.824 10 H 0.048 0.952 11 C 0.073 3.927 12 O -0.378 6.378 13 C 0.077 3.923 14 C 0.018 3.982 15 H 0.054 0.946 16 C 0.064 3.936 17 N -0.687 5.687 18 C 0.057 3.943 19 C 0.026 3.974 20 N -0.528 5.528 21 H 0.263 0.737 22 H 0.011 0.989 23 H 0.123 0.877 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.335 0.665 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -6.745 -0.665 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.069 3.931 10 H 0.066 0.934 11 C -0.004 4.004 12 O -0.296 6.296 13 C -0.002 4.002 14 C -0.093 4.093 15 H 0.071 0.929 16 C -0.067 4.067 17 N -0.315 5.315 18 C -0.073 4.073 19 C -0.105 4.105 20 N -0.254 5.254 21 H 0.073 0.927 22 H 0.030 0.970 23 H 0.140 0.860 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.861 -7.625 -0.800 9.078 hybrid contribution 0.504 2.552 0.291 2.617 sum 5.364 -5.073 -0.509 7.401 Atomic orbital electron populations 1.69775 1.05913 1.26808 1.50517 1.24865 0.94833 0.99113 0.94475 0.86509 0.79950 0.83733 0.77609 1.20077 1.20824 1.21032 1.21466 0.92903 0.91224 1.50998 0.92787 1.19949 0.90868 0.86661 0.95586 0.93449 1.22879 0.92440 1.00162 0.84893 1.87956 1.49927 1.48337 1.43375 1.22330 0.91210 0.90693 0.95921 1.22825 0.95550 0.97916 0.92992 0.92855 1.22083 0.94226 0.97967 0.92396 1.60894 1.21431 1.46676 1.02474 1.22124 0.94425 0.98516 0.92197 1.22600 0.96297 0.97127 0.94427 1.62807 1.16404 1.45989 1.00157 0.92685 0.97035 0.85955 0.90515 0.94210 0.91150 0.90750 0.84863 0.91213 0.90803 0.94194 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 11.30 55.43 0.63 -24.33 16 2 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.17 6.80 -34.44 -0.23 -14.41 16 8 H 0.05 1.48 5.77 -52.49 -0.30 1.18 16 9 C 0.18 4.39 2.38 -68.75 -0.16 4.23 16 10 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.07 1.81 6.23 37.19 0.23 2.04 16 12 O -0.38 -9.11 10.53 -35.23 -0.37 -9.48 16 13 C 0.08 1.51 6.27 37.21 0.23 1.74 16 14 C 0.02 0.35 2.15 -67.56 -0.15 0.21 16 15 H 0.05 1.19 6.64 -51.93 -0.34 0.84 16 16 C 0.06 1.01 5.98 -3.77 -0.02 0.98 16 17 N -0.69 -10.55 6.92 -113.66 -0.79 -11.34 16 18 C 0.06 0.89 6.72 -3.77 -0.03 0.87 16 19 C 0.03 0.49 5.26 -3.77 -0.02 0.47 16 20 N -0.53 -11.23 4.66 -219.67 -1.02 -12.26 16 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.12 3.31 6.00 -51.93 -0.31 3.00 16 24 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.33 4.98 8.88 -39.29 -0.35 4.64 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.84 6.64 -51.93 -0.34 0.49 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 246.88 15.07 3.72 3.72 Total: -1.00 -28.36 246.88 -7.69 -36.05 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.59 Total: 3.30 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.24 Total: -2.07 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -1.18 Total: -47.93 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.37 Total: -9.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.36 -7.69 -36.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.454 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds