Wall clock time and date at job start Mon Mar 30 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08999 * 109.49523 * 300.04666 * 9 7 2 11 11 C 1.53072 * 109.49010 * 60.11629 * 9 7 2 12 12 O 1.43034 * 109.17078 * 62.99501 * 11 9 7 13 13 C 1.42980 * 113.65098 * 58.89362 * 12 11 9 14 14 C 1.53104 * 109.37577 * 301.25209 * 13 12 11 15 15 H 1.08995 * 109.75072 * 296.38762 * 14 13 12 16 16 C 1.53071 * 109.21479 * 176.28431 * 14 13 12 17 17 N 1.46923 * 109.46327 * 182.10208 * 16 14 13 18 18 C 1.46975 * 110.80295 * 59.41121 * 17 16 14 19 19 C 1.53020 * 109.28638 * 300.50315 * 18 17 16 20 20 N 1.46984 * 109.46030 * 58.51655 * 19 18 17 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.52166 * 182.89557 * 11 9 7 23 23 H 1.08997 * 109.52136 * 303.08201 * 11 9 7 24 24 H 1.09007 * 109.48683 * 181.28570 * 13 12 11 25 25 H 1.09001 * 109.50343 * 61.23737 * 13 12 11 26 26 H 1.09006 * 109.46474 * 62.11243 * 16 14 13 27 27 H 1.08994 * 109.47242 * 302.10936 * 16 14 13 28 28 H 1.00902 * 111.00317 * 295.59418 * 17 16 14 29 29 H 1.08994 * 109.50285 * 180.55980 * 18 17 16 30 30 H 1.09000 * 109.53674 * 60.46491 * 18 17 16 31 31 H 1.09005 * 109.47519 * 298.52360 * 19 18 17 32 32 H 1.08996 * 109.47568 * 178.51235 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6273 -2.5551 0.8974 11 6 0.3677 -2.5844 -1.2420 12 8 1.1981 -2.5822 -2.4067 13 6 2.1363 -3.6604 -2.4442 14 6 3.0378 -3.5926 -1.2086 15 1 3.6237 -2.6737 -1.2301 16 6 3.9788 -4.7999 -1.2046 17 7 4.8121 -4.7671 0.0050 18 6 3.9778 -4.7981 1.2146 19 6 3.0405 -3.5885 1.2132 20 7 2.2061 -3.6171 0.0035 21 1 -0.4850 0.8401 0.0004 22 1 -0.2160 -3.5045 -1.2128 23 1 -0.3040 -1.7265 -1.2719 24 1 2.7463 -3.5806 -3.3441 25 1 1.6000 -4.6094 -2.4515 26 1 4.6178 -4.7654 -2.0870 27 1 3.3917 -5.7182 -1.2167 28 1 5.4186 -3.9608 0.0046 29 1 4.6158 -4.7629 2.0977 30 1 3.3886 -5.7150 1.2277 31 1 3.6301 -2.6718 1.2263 32 1 2.4019 -3.6226 2.0959 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259743450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:02 Heat of formation + Delta-G solvation = -55.564984 kcal Electronic energy + Delta-G solvation = -15364.267746 eV Core-core repulsion = 12937.712247 eV Total energy + Delta-G solvation = -2426.555499 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.02201 -38.08061 -35.73167 -34.01075 -32.63342 -30.44735 -27.40284 -26.30328 -25.46454 -23.53852 -21.88801 -21.02581 -18.32472 -17.46950 -16.96833 -16.69719 -16.22970 -15.94297 -15.52497 -15.34338 -14.96912 -14.52246 -14.31166 -13.25774 -13.08324 -12.91966 -12.68150 -12.42528 -12.37597 -12.29851 -12.11083 -11.73284 -11.68157 -11.23285 -10.75467 -10.28470 -9.31810 -9.07506 -8.14186 -6.32639 1.31787 1.34722 1.43556 2.34635 3.05174 3.12844 3.30572 3.40993 4.03867 4.24257 4.27956 4.34375 4.38049 4.54572 4.57337 4.63964 4.82602 4.85229 4.92182 4.95961 5.13854 5.15361 5.25444 5.43587 5.74038 5.97258 5.99540 6.16932 6.41165 6.41868 6.60117 6.77755 7.36423 8.84661 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.012762 C = 0.011111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.077820 B = 2193.404715 C = 2519.391665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.044 0.956 9 C 0.179 3.821 10 H 0.017 0.983 11 C 0.082 3.918 12 O -0.402 6.402 13 C 0.069 3.931 14 C 0.020 3.980 15 H 0.023 0.977 16 C 0.074 3.926 17 N -0.680 5.680 18 C 0.069 3.931 19 C 0.026 3.974 20 N -0.528 5.528 21 H 0.264 0.736 22 H 0.023 0.977 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.339 0.661 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.017 0.983 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -7.784 -1.065 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.062 0.938 9 C 0.071 3.929 10 H 0.035 0.965 11 C 0.004 3.996 12 O -0.320 6.320 13 C -0.009 4.009 14 C -0.091 4.091 15 H 0.041 0.959 16 C -0.057 4.057 17 N -0.307 5.307 18 C -0.061 4.061 19 C -0.104 4.104 20 N -0.253 5.253 21 H 0.074 0.926 22 H 0.041 0.959 23 H 0.112 0.888 24 H 0.125 0.875 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.156 0.844 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.035 0.965 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.462 -8.680 -1.197 10.887 hybrid contribution 0.025 2.831 0.407 2.861 sum 6.488 -5.848 -0.790 8.770 Atomic orbital electron populations 1.69891 1.06949 1.27475 1.51104 1.25587 0.95650 1.02115 0.94464 0.85601 0.78746 0.80158 0.77663 1.19892 1.20728 1.20302 1.21602 0.92436 0.92370 1.50690 0.93819 1.19721 0.91393 0.87413 0.94350 0.96524 1.22576 0.92368 0.99409 0.85201 1.87896 1.50843 1.50491 1.42799 1.22675 0.90884 0.90047 0.97282 1.22917 0.95542 0.98549 0.92078 0.95882 1.22084 0.93850 0.96026 0.93709 1.60925 1.20924 1.46685 1.02172 1.22097 0.94017 0.96546 0.93446 1.22686 0.96262 0.98102 0.93355 1.62787 1.16940 1.43803 1.01815 0.92613 0.95905 0.88836 0.87473 0.92605 0.88469 0.90028 0.84385 0.88703 0.90220 0.96505 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.36 11.30 21.45 0.24 -52.12 16 2 C 0.02 1.19 5.30 84.66 0.45 1.64 16 3 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -29.15 6.80 25.60 0.17 -28.98 16 8 H 0.04 2.44 5.77 -2.92 -0.02 2.42 16 9 C 0.18 9.12 2.38 44.17 0.11 9.22 16 10 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 11 C 0.08 4.10 6.23 72.01 0.45 4.55 16 12 O -0.40 -19.25 10.53 -148.98 -1.57 -20.82 16 13 C 0.07 2.55 6.27 72.02 0.45 3.00 16 14 C 0.02 0.75 2.15 44.95 0.10 0.85 16 15 H 0.02 1.02 6.64 -2.39 -0.02 1.00 16 16 C 0.07 2.09 5.98 86.32 0.52 2.60 16 17 N -0.68 -18.71 6.92 -513.49 -3.55 -22.26 16 18 C 0.07 1.97 6.72 86.30 0.58 2.55 16 19 C 0.03 0.98 5.26 86.29 0.45 1.43 16 20 N -0.53 -22.24 4.66 -848.89 -3.95 -26.20 16 21 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 22 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.09 5.24 6.00 -2.39 -0.01 5.22 16 24 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.34 9.14 8.88 -89.69 -0.80 8.35 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.02 0.71 6.64 -2.38 -0.02 0.69 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -61.12 246.88 -3.21 -64.34 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.32 Total: 13.79 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 3.28 Total: -3.13 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -7.26 Total: -100.58 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -1.57 Total: -20.82 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.12 -3.21 -64.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.771 kcal (2) G-P(sol) polarization free energy of solvation -61.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds