Wall clock time and date at job start Mon Mar 30 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 7 7 C 1.53002 * 109.46941 * 299.99657 * 5 3 2 8 8 C 1.52997 * 109.47493 * 179.97438 * 7 5 3 9 9 C 1.53006 * 109.46769 * 59.99990 * 8 7 5 10 10 C 1.52998 * 109.47286 * 299.99910 * 9 8 7 11 11 H 1.08995 * 109.47244 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47393 * 300.00445 * 10 9 8 13 13 H 1.07998 * 120.00782 * 119.99638 * 12 10 9 14 14 C 1.37885 * 119.99832 * 299.99719 * 12 10 9 15 15 N 1.31511 * 119.99772 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99984 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47205 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47155 * 120.00305 * 16 14 12 19 19 H 1.48500 * 109.47390 * 240.00346 * 16 14 12 20 20 C 1.52997 * 109.46630 * 60.00179 * 10 9 8 21 21 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 22 22 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 23 23 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47318 * 300.00255 * 7 5 3 25 25 H 1.09008 * 109.46908 * 59.99812 * 7 5 3 26 26 H 1.09003 * 109.47116 * 300.00464 * 8 7 5 27 27 H 1.09001 * 109.47677 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46515 * 179.97438 * 9 8 7 29 29 H 1.09000 * 109.47144 * 60.00813 * 9 8 7 30 30 H 0.97006 * 119.99432 * 180.02562 * 15 14 12 31 31 H 1.09005 * 109.47056 * 179.97438 * 20 10 9 32 32 H 1.09000 * 109.47303 * 60.00510 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5811 1.2484 8 6 5.6418 0.6606 1.2476 9 6 6.0760 2.1277 1.2473 10 6 5.5286 2.8215 -0.0016 11 1 5.8376 3.8667 -0.0016 12 6 6.0665 2.1382 -1.2324 13 1 5.3866 1.6918 -1.9429 14 6 7.4267 2.0829 -1.4513 15 7 8.2546 2.6260 -0.5858 16 14 8.0935 1.2352 -2.9765 17 1 6.9638 0.7092 -3.7843 18 1 8.8684 2.2099 -3.7857 19 1 8.9783 0.1131 -2.5724 20 6 4.0007 2.7419 -0.0007 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.7244 1.0750 2.1386 25 1 3.8048 -0.4642 1.2483 26 1 6.0308 0.1664 0.3573 27 1 6.0318 0.1668 2.1376 28 1 7.1646 2.1843 1.2472 29 1 5.6870 2.6220 2.1376 30 1 9.2115 2.5874 -0.7401 31 1 3.6106 3.2365 -0.8903 32 1 3.6116 3.2362 0.8894 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259945053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:59 Heat of formation + Delta-G solvation = -128.443267 kcal Electronic energy + Delta-G solvation = -14739.512101 eV Core-core repulsion = 12277.503611 eV Total energy + Delta-G solvation = -2462.008489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66099 -39.16238 -37.39815 -34.62169 -31.79373 -31.54573 -28.51018 -26.89143 -24.59481 -22.98360 -21.62115 -20.50341 -18.49360 -17.85976 -17.53185 -17.28478 -16.47324 -15.70701 -14.93408 -14.76767 -14.71008 -14.10989 -13.66021 -13.35506 -13.17973 -12.95606 -12.85663 -12.69928 -12.36593 -12.09670 -11.91396 -11.75371 -11.55811 -11.35634 -10.95805 -10.76617 -10.52937 -10.26069 -8.01457 -6.12562 1.19881 1.43172 1.47014 1.56168 1.83260 2.48220 3.27131 3.78064 3.98644 4.03189 4.33595 4.35219 4.48647 4.61326 4.72079 4.76220 4.83230 4.89256 4.94782 5.07282 5.16151 5.29585 5.33269 5.41972 5.67532 5.73794 5.76244 5.96818 6.23417 6.45098 6.77657 6.96515 7.53888 9.03651 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.039459 B = 0.009249 C = 0.008613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.430188 B = 3026.700527 C = 3250.131398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.361 6.361 3 C 0.471 3.529 4 O -0.541 6.541 5 C -0.067 4.067 6 H 0.109 0.891 7 C -0.091 4.091 8 C -0.096 4.096 9 C -0.109 4.109 10 C 0.040 3.960 11 H -0.006 1.006 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.017 3.983 15 N -0.917 5.917 16 Si 0.943 3.057 17 H -0.266 1.266 18 H -0.288 1.288 19 H -0.280 1.280 20 C -0.079 4.079 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.135 0.865 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.258 0.742 31 H 0.041 0.959 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 -7.426 2.542 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.431 6.431 5 C -0.086 4.086 6 H 0.127 0.873 7 C -0.129 4.129 8 C -0.133 4.133 9 C -0.147 4.147 10 C 0.022 3.978 11 H 0.012 0.988 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.181 4.181 15 N -0.557 5.557 16 Si 0.770 3.230 17 H -0.191 1.191 18 H -0.214 1.214 19 H -0.206 1.206 20 C -0.117 4.117 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.153 0.847 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.412 -7.124 2.568 12.875 hybrid contribution 0.464 0.178 -0.896 1.024 sum -9.948 -6.945 1.673 12.247 Atomic orbital electron populations 1.23563 0.75105 1.05727 1.02379 1.86530 1.24856 1.32659 1.83656 1.24292 0.92463 0.81092 0.70579 1.90594 1.67894 1.37476 1.47124 1.21053 0.84828 0.99610 1.03142 0.87274 1.21405 0.96331 1.00502 0.94644 1.21284 0.94129 0.96918 1.00972 1.21444 1.01959 0.95467 0.95825 1.18688 0.89818 0.94648 0.94659 0.98826 1.21407 0.91623 1.35446 1.06462 0.92639 1.25609 0.97561 0.96285 0.98675 1.70019 1.02768 1.46214 1.36726 0.85730 0.78488 0.78353 0.80462 1.19057 1.21426 1.20629 1.21302 0.97428 0.93051 0.99871 0.91944 0.92302 0.84739 0.91918 0.89553 0.92662 0.92004 0.91995 0.95481 0.93248 0.94039 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.42 10.47 -51.35 -0.54 -10.96 16 3 C 0.47 16.45 7.26 71.23 0.52 16.96 16 4 O -0.54 -21.39 15.73 21.94 0.35 -21.04 16 5 C -0.07 -2.50 2.40 -11.54 -0.03 -2.53 16 6 H 0.11 4.23 6.62 -2.39 -0.02 4.22 16 7 C -0.09 -3.02 5.13 30.59 0.16 -2.87 16 8 C -0.10 -3.68 5.70 30.60 0.17 -3.50 16 9 C -0.11 -4.98 5.23 30.60 0.16 -4.82 16 10 C 0.04 1.99 2.59 -11.54 -0.03 1.96 16 11 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 12 C -0.51 -26.79 6.61 25.60 0.17 -26.62 16 13 H 0.06 2.85 6.71 -2.91 -0.02 2.83 16 14 C 0.02 0.91 5.30 84.66 0.45 1.36 16 15 N -0.92 -51.81 11.32 21.45 0.24 -51.57 16 16 Si 0.94 42.53 29.54 68.60 2.03 44.56 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C -0.08 -3.38 3.98 30.59 0.12 -3.26 16 21 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 22 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 23 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.09 2.43 8.11 -2.38 -0.02 2.41 16 26 H 0.05 2.34 7.22 -2.39 -0.02 2.32 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 31 H 0.04 1.84 8.10 -2.38 -0.02 1.82 16 32 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 Total: -1.00 -60.73 259.36 6.05 -54.68 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.09 Total: 5.94 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 2.89 Total: -21.60 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.24 Total: -51.57 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.19 Total: -32.00 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -60.73 6.05 -54.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.764 kcal (2) G-P(sol) polarization free energy of solvation -60.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds