Wall clock time and date at job start Mon Mar 30 2020 02:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34232 * 117.00018 * 2 1 4 4 O 1.20827 * 119.99975 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99992 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46805 * 300.00305 * 5 3 2 7 7 C 1.52995 * 109.46837 * 60.00081 * 5 3 2 8 8 C 1.53002 * 109.47075 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47070 * 300.00148 * 8 7 5 10 10 C 1.52999 * 109.46946 * 59.99602 * 9 8 7 11 11 H 1.08998 * 109.47247 * 60.00426 * 10 9 8 12 12 C 1.50702 * 109.46857 * 180.02562 * 10 9 8 13 13 H 1.08000 * 120.00016 * 28.33145 * 12 10 9 14 14 C 1.37877 * 119.99739 * 208.33909 * 12 10 9 15 15 N 1.31514 * 120.00462 * 353.63759 * 14 12 10 16 16 Si 1.86802 * 120.00057 * 173.36603 * 14 12 10 17 17 H 1.48502 * 109.47328 * 59.99625 * 16 14 12 18 18 H 1.48493 * 109.47387 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46837 * 299.99832 * 16 14 12 20 20 C 1.52997 * 109.46754 * 179.97438 * 5 3 2 21 21 H 1.08995 * 109.47201 * 59.99793 * 1 2 3 22 22 H 1.08994 * 109.46778 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46454 * 299.99792 * 1 2 3 24 24 H 1.09003 * 109.47417 * 299.99900 * 7 5 3 25 25 H 1.08998 * 109.47387 * 59.99969 * 7 5 3 26 26 H 1.08998 * 109.47108 * 59.99713 * 8 7 5 27 27 H 1.08998 * 109.47362 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46861 * 300.00256 * 9 8 7 29 29 H 1.09001 * 109.47309 * 179.97438 * 9 8 7 30 30 H 0.97003 * 119.99319 * 354.28232 * 15 14 12 31 31 H 1.09000 * 109.47288 * 60.00546 * 20 5 3 32 32 H 1.08990 * 109.47476 * 300.00148 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9565 0.7805 0.8891 7 6 4.1129 0.5816 -1.2502 8 6 5.6408 0.6611 -1.2505 9 6 6.0752 2.1281 -1.2500 10 6 5.5286 2.8214 -0.0004 11 1 5.9184 2.3269 0.8893 12 6 5.9560 4.2666 -0.0003 13 1 6.1348 4.7769 -0.9351 14 6 6.1187 4.9372 1.1934 15 7 5.7818 4.3573 2.3247 16 14 6.8247 6.6666 1.2044 17 1 5.9511 7.5631 0.4055 18 1 6.8965 7.1631 2.6021 19 1 8.1874 6.6487 0.6143 20 6 4.0001 2.7421 -0.0011 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 3.8038 -0.4637 -1.2503 25 1 3.7228 1.0759 -2.1399 26 1 6.0306 0.1665 -0.3608 27 1 6.0302 0.1676 -2.1409 28 1 5.6854 2.6227 -2.1397 29 1 7.1638 2.1848 -1.2498 30 1 5.3427 3.4924 2.3144 31 1 3.6108 3.2364 0.8889 32 1 3.6101 3.2360 -0.8909 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259945054.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:01 Heat of formation + Delta-G solvation = -120.992484 kcal Electronic energy + Delta-G solvation = -14562.243723 eV Core-core repulsion = 12100.558324 eV Total energy + Delta-G solvation = -2461.685399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.31264 -37.65154 -36.06322 -33.16536 -30.70875 -29.45677 -27.54530 -24.39618 -23.25739 -21.38379 -20.29645 -19.04011 -17.40215 -16.73748 -16.14318 -15.85048 -14.30848 -13.81908 -13.69228 -13.63145 -13.41825 -12.81676 -12.27666 -12.14381 -11.73762 -11.49409 -11.23619 -10.73269 -10.62850 -10.49584 -10.40003 -10.15532 -10.07681 -10.03274 -9.51190 -9.12550 -8.42355 -8.26388 -6.31366 -4.02523 2.56121 3.00839 3.47291 3.48748 3.67325 4.57098 5.01943 5.16219 5.20453 5.25234 5.27670 5.42185 5.49863 5.73901 5.84069 5.98814 6.08499 6.19002 6.31083 6.43820 6.60796 6.65712 6.67314 6.90691 6.99288 7.13537 7.49742 7.66528 8.09980 8.28161 8.49082 8.91687 9.69222 11.06793 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.038382 B = 0.008716 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.333918 B = 3211.577423 C = 3706.730501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.505 6.505 5 C -0.082 4.082 6 H 0.101 0.899 7 C -0.102 4.102 8 C -0.118 4.118 9 C -0.106 4.106 10 C 0.032 3.968 11 H 0.033 0.967 12 C -0.591 4.591 13 H 0.048 0.952 14 C 0.020 3.980 15 N -0.911 5.911 16 Si 1.064 2.936 17 H -0.289 1.289 18 H -0.283 1.283 19 H -0.288 1.288 20 C -0.089 4.089 21 H 0.059 0.941 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.270 0.730 31 H 0.061 0.939 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -9.318 -5.220 12.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.305 3.695 4 O -0.391 6.391 5 C -0.101 4.101 6 H 0.119 0.881 7 C -0.140 4.140 8 C -0.155 4.155 9 C -0.144 4.144 10 C 0.013 3.987 11 H 0.051 0.949 12 C -0.629 4.629 13 H 0.067 0.933 14 C -0.184 4.184 15 N -0.547 5.547 16 Si 0.893 3.107 17 H -0.215 1.215 18 H -0.209 1.209 19 H -0.215 1.215 20 C -0.128 4.128 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.219 -7.783 -4.209 10.273 hybrid contribution -0.917 -1.176 -1.007 1.799 sum -6.136 -8.959 -5.217 12.047 Atomic orbital electron populations 1.23177 0.77501 1.03054 1.02308 1.86550 1.22630 1.34475 1.84537 1.24439 0.92657 0.80826 0.71619 1.90641 1.67197 1.36399 1.44859 1.21466 0.84873 1.02618 1.01110 0.88124 1.21449 0.96985 0.99418 0.96139 1.21598 0.94053 0.98945 1.00941 1.21613 0.99979 0.92725 1.00080 1.18896 0.89625 0.96510 0.93633 0.94854 1.21927 1.50005 0.96114 0.94899 0.93321 1.25804 0.95581 1.04712 0.92309 1.70790 1.37990 1.18050 1.27858 0.83622 0.76231 0.75004 0.75885 1.21513 1.20856 1.21460 1.21835 1.00016 0.88787 1.02132 0.92249 0.88578 0.92179 0.91828 0.92038 0.92257 0.92749 0.93383 0.92820 0.91886 0.92070 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.69 10.47 -39.26 -0.41 -6.10 16 3 C 0.46 8.56 7.26 36.01 0.26 8.82 16 4 O -0.50 -10.85 15.73 -18.75 -0.29 -11.14 16 5 C -0.08 -1.52 2.63 -91.78 -0.24 -1.76 16 6 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 7 C -0.10 -1.64 5.13 -26.73 -0.14 -1.78 16 8 C -0.12 -1.93 5.92 -26.73 -0.16 -2.09 16 9 C -0.11 -2.16 5.19 -26.73 -0.14 -2.30 16 10 C 0.03 0.78 1.74 -91.74 -0.16 0.62 16 11 H 0.03 0.86 6.98 -51.93 -0.36 0.50 16 12 C -0.59 -16.46 8.30 -34.44 -0.29 -16.75 16 13 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 14 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 15 N -0.91 -27.42 13.55 55.43 0.75 -26.67 16 16 Si 1.06 25.34 29.91 -169.99 -5.08 20.25 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.09 -2.05 3.67 -26.70 -0.10 -2.15 16 21 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 22 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.27 8.03 6.38 -40.82 -0.26 7.77 16 31 H 0.06 1.58 7.65 -51.93 -0.40 1.18 16 32 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 265.12 15.07 4.00 4.00 Total: -1.00 -31.22 265.12 -5.90 -37.12 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.87 Total: -2.03 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 0.01 Total: -15.43 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.75 Total: -26.67 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.71 Total: -17.24 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.22 -5.90 -37.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945054.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.871 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds