Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.62812 * 2 1 4 4 C 1.53003 * 117.49695 * 133.04802 * 3 2 1 5 5 C 1.53004 * 117.49626 * 64.38841 * 3 2 1 6 6 O 1.43364 * 109.63134 * 120.39533 * 2 1 3 7 7 C 1.44196 * 107.28700 * 119.20880 * 6 2 1 8 8 C 1.54913 * 103.07863 * 338.56403 * 7 6 2 9 9 H 1.09006 * 110.97534 * 277.41496 * 8 7 6 10 10 C 1.52992 * 110.97977 * 153.66932 * 8 7 6 11 11 C 1.50701 * 109.47052 * 174.99741 * 10 8 7 12 12 H 1.07995 * 120.00036 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99914 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00270 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00029 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47148 * 60.00207 * 15 13 11 17 17 H 1.48504 * 109.46962 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46823 * 300.00130 * 15 13 11 19 19 O 1.43756 * 109.62750 * 239.76117 * 2 1 3 20 20 H 1.09001 * 109.47002 * 300.30325 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.30762 * 1 2 3 22 22 H 1.09000 * 109.47050 * 180.30591 * 1 2 3 23 23 H 1.08992 * 115.54820 * 278.72145 * 3 2 1 24 24 H 1.09006 * 117.49731 * 0.02562 * 4 3 2 25 25 H 1.08994 * 117.49819 * 145.02114 * 4 3 2 26 26 H 1.08992 * 117.49652 * 214.97484 * 5 3 2 27 27 H 1.08998 * 117.49836 * 359.97438 * 5 3 2 28 28 H 1.09004 * 110.69783 * 96.96151 * 7 6 2 29 29 H 1.09002 * 110.69699 * 219.99251 * 7 6 2 30 30 H 1.08998 * 109.47147 * 294.99739 * 10 8 7 31 31 H 1.09007 * 109.47439 * 55.00108 * 10 8 7 32 32 H 0.97000 * 120.00625 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 3.1539 1.7953 0.9918 5 6 1.7287 2.3035 1.2239 6 8 2.0117 -0.6832 1.1647 7 6 2.7885 -1.8098 0.7101 8 6 2.2653 -2.0381 -0.7300 9 1 1.3461 -2.6240 -0.7229 10 6 3.3310 -2.7069 -1.6005 11 6 2.7480 -3.0240 -2.9535 12 1 1.7203 -2.7733 -3.1709 13 6 3.5270 -3.6334 -3.9141 14 7 4.7786 -3.9383 -3.6496 15 14 2.8045 -4.0259 -5.5915 16 1 2.3508 -2.7701 -6.2412 17 1 3.8390 -4.6752 -6.4363 18 1 1.6494 -4.9451 -5.4301 19 8 2.0129 -0.6819 -1.1698 20 1 -0.3633 0.5185 0.8873 21 1 -0.3633 0.5090 -0.8927 22 1 -0.3633 -1.0277 0.0055 23 1 2.0615 1.9339 -0.9720 24 1 3.5182 1.0014 1.6440 25 1 3.9014 2.5214 0.6724 26 1 1.5393 3.3638 1.0570 27 1 1.1548 1.8444 2.0288 28 1 3.8509 -1.5662 0.6998 29 1 2.6012 -2.6838 1.3339 30 1 4.1788 -2.0323 -1.7192 31 1 3.6640 -3.6286 -1.1233 32 1 5.3266 -4.3674 -4.3252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260204289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = -74.667294 kcal Electronic energy + Delta-G solvation = -14606.071103 eV Core-core repulsion = 12146.394515 eV Total energy + Delta-G solvation = -2459.676588 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.17875 -36.56861 -34.45453 -33.22453 -31.27723 -29.20452 -26.49800 -23.68959 -23.23254 -22.10525 -20.66809 -19.56146 -17.13409 -16.29687 -15.89006 -15.13793 -14.74902 -14.36660 -14.02787 -13.41384 -12.79123 -12.58396 -12.24116 -11.93126 -11.73669 -11.59072 -11.35932 -11.18941 -11.13123 -10.58486 -10.50688 -10.28260 -10.03405 -9.65254 -9.43041 -9.14433 -8.97513 -8.39907 -6.02705 -4.04268 3.34194 3.37926 3.41460 3.86263 3.99009 4.38242 4.45182 4.99913 5.08969 5.24395 5.33226 5.34476 5.47736 5.59538 5.68240 5.73895 5.78847 5.85802 5.94811 6.12940 6.24494 6.28525 6.33908 6.41806 6.45011 6.75873 7.41939 7.57184 7.85678 7.93798 8.34032 8.99221 9.58999 11.08844 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.047810 B = 0.007666 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.509591 B = 3651.675206 C = 3758.514772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.277 3.723 3 C -0.159 4.159 4 C -0.166 4.166 5 C -0.169 4.169 6 O -0.388 6.388 7 C 0.021 3.979 8 C 0.060 3.940 9 H 0.071 0.929 10 C 0.029 3.971 11 C -0.515 4.515 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.352 6.352 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 8.083 8.763 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.199 3.801 3 C -0.178 4.178 4 C -0.203 4.203 5 C -0.206 4.206 6 O -0.310 6.310 7 C -0.056 4.056 8 C 0.003 3.997 9 H 0.088 0.912 10 C -0.008 4.008 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 O -0.272 6.272 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.133 0.867 24 H 0.120 0.880 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.327 8.151 8.676 13.042 hybrid contribution -0.301 -0.367 -1.016 1.122 sum -5.629 7.784 7.660 12.286 Atomic orbital electron populations 1.22261 0.94336 1.02812 1.02533 1.22586 0.92075 0.89080 0.76365 1.22498 1.04776 0.94783 0.95731 1.22891 0.91461 1.03188 1.02711 1.22880 0.99541 0.98808 0.99414 1.88736 1.69643 1.42482 1.30105 1.24351 0.96348 0.88471 0.96384 1.24249 1.00217 0.83256 0.91954 0.91153 1.19161 0.92477 0.95185 0.94007 1.21078 0.98030 1.38686 0.97514 0.92439 1.24991 0.94837 0.95750 0.98811 1.69937 1.06836 1.42181 1.34703 0.86602 0.78677 0.78597 0.83827 1.20171 1.21268 1.20225 1.89383 1.85389 1.22793 1.29650 0.91546 0.90921 0.91946 0.86671 0.87990 0.89157 0.89005 0.88712 0.90930 0.89113 0.95202 0.94674 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.09 37.16 0.34 -2.12 16 2 C 0.28 4.90 1.26 -26.73 -0.03 4.87 16 3 C -0.16 -2.48 5.46 -90.62 -0.49 -2.98 16 4 C -0.17 -2.33 9.89 -26.69 -0.26 -2.60 16 5 C -0.17 -2.13 9.70 -26.69 -0.26 -2.39 16 6 O -0.39 -6.87 9.24 -59.04 -0.55 -7.42 16 7 C 0.02 0.37 7.54 38.17 0.29 0.66 16 8 C 0.06 1.29 3.37 -25.73 -0.09 1.20 16 9 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 10 C 0.03 0.74 4.75 -27.89 -0.13 0.60 16 11 C -0.51 -14.70 9.07 -34.44 -0.31 -15.02 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 O -0.35 -7.71 10.68 -59.04 -0.63 -8.34 16 20 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 21 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 24 H 0.10 1.53 7.12 -51.93 -0.37 1.16 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 28 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 269.61 15.07 4.06 4.06 Total: -1.00 -30.45 269.61 -7.39 -37.84 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.94 Total: -0.68 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.05 Total: -16.21 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -1.18 Total: -15.76 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.45 -7.39 -37.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.829 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds