Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.62812 * 2 1 4 4 C 1.53003 * 117.49695 * 133.04802 * 3 2 1 5 5 C 1.53004 * 117.49626 * 64.38841 * 3 2 1 6 6 O 1.43364 * 109.63134 * 120.39533 * 2 1 3 7 7 C 1.44196 * 107.28700 * 119.20880 * 6 2 1 8 8 C 1.54913 * 103.07863 * 338.56403 * 7 6 2 9 9 H 1.09006 * 110.97534 * 277.41496 * 8 7 6 10 10 C 1.52992 * 110.97977 * 153.66932 * 8 7 6 11 11 C 1.50701 * 109.47052 * 174.99741 * 10 8 7 12 12 H 1.07995 * 120.00036 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99914 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00270 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00029 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47148 * 60.00207 * 15 13 11 17 17 H 1.48504 * 109.46962 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46823 * 300.00130 * 15 13 11 19 19 O 1.43756 * 109.62750 * 239.76117 * 2 1 3 20 20 H 1.09001 * 109.47002 * 300.30325 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.30762 * 1 2 3 22 22 H 1.09000 * 109.47050 * 180.30591 * 1 2 3 23 23 H 1.08992 * 115.54820 * 278.72145 * 3 2 1 24 24 H 1.09006 * 117.49731 * 0.02562 * 4 3 2 25 25 H 1.08994 * 117.49819 * 145.02114 * 4 3 2 26 26 H 1.08992 * 117.49652 * 214.97484 * 5 3 2 27 27 H 1.08998 * 117.49836 * 359.97438 * 5 3 2 28 28 H 1.09004 * 110.69783 * 96.96151 * 7 6 2 29 29 H 1.09002 * 110.69699 * 219.99251 * 7 6 2 30 30 H 1.08998 * 109.47147 * 294.99739 * 10 8 7 31 31 H 1.09007 * 109.47439 * 55.00108 * 10 8 7 32 32 H 0.97000 * 120.00625 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 3.1539 1.7953 0.9918 5 6 1.7287 2.3035 1.2239 6 8 2.0117 -0.6832 1.1647 7 6 2.7885 -1.8098 0.7101 8 6 2.2653 -2.0381 -0.7300 9 1 1.3461 -2.6240 -0.7229 10 6 3.3310 -2.7069 -1.6005 11 6 2.7480 -3.0240 -2.9535 12 1 1.7203 -2.7733 -3.1709 13 6 3.5270 -3.6334 -3.9141 14 7 4.7786 -3.9383 -3.6496 15 14 2.8045 -4.0259 -5.5915 16 1 2.3508 -2.7701 -6.2412 17 1 3.8390 -4.6752 -6.4363 18 1 1.6494 -4.9451 -5.4301 19 8 2.0129 -0.6819 -1.1698 20 1 -0.3633 0.5185 0.8873 21 1 -0.3633 0.5090 -0.8927 22 1 -0.3633 -1.0277 0.0055 23 1 2.0615 1.9339 -0.9720 24 1 3.5182 1.0014 1.6440 25 1 3.9014 2.5214 0.6724 26 1 1.5393 3.3638 1.0570 27 1 1.1548 1.8444 2.0288 28 1 3.8509 -1.5662 0.6998 29 1 2.6012 -2.6838 1.3339 30 1 4.1788 -2.0323 -1.7192 31 1 3.6640 -3.6286 -1.1233 32 1 5.3266 -4.3674 -4.3252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260204289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = -93.124430 kcal Electronic energy + Delta-G solvation = -14606.871464 eV Core-core repulsion = 12146.394515 eV Total energy + Delta-G solvation = -2460.476950 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.63192 -37.80941 -36.00908 -35.24327 -32.98286 -30.77044 -28.29666 -25.15733 -24.92742 -23.15473 -22.41545 -20.90957 -18.80803 -18.19288 -17.44224 -16.63533 -16.43836 -15.73925 -15.55971 -14.83916 -14.50043 -14.00784 -13.84227 -13.68346 -13.19970 -13.09761 -13.03147 -12.78071 -12.49603 -12.36915 -12.29458 -11.71291 -11.34429 -11.30089 -11.09767 -10.93275 -10.61359 -10.45040 -8.23140 -6.32994 1.38744 1.41974 1.49920 2.39436 2.48074 2.76833 3.06116 3.14072 3.70292 3.81940 3.94354 4.03418 4.14502 4.21314 4.39000 4.42663 4.55343 4.70393 4.73072 4.78800 4.84624 5.03352 5.06293 5.17758 5.19916 5.30173 5.32619 5.53519 5.72621 6.15145 6.30382 6.78133 7.34841 8.88601 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.047810 B = 0.007666 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.509591 B = 3651.675206 C = 3758.514772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.266 3.734 3 C -0.187 4.187 4 C -0.173 4.173 5 C -0.137 4.137 6 O -0.385 6.385 7 C 0.030 3.970 8 C 0.063 3.937 9 H 0.074 0.926 10 C 0.035 3.965 11 C -0.537 4.537 12 H 0.054 0.946 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.264 1.264 19 O -0.384 6.384 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.056 0.944 23 H 0.110 0.890 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.119 0.881 30 H -0.002 1.002 31 H 0.025 0.975 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 8.852 9.178 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.189 3.811 3 C -0.205 4.205 4 C -0.210 4.210 5 C -0.174 4.174 6 O -0.306 6.306 7 C -0.046 4.046 8 C 0.006 3.994 9 H 0.092 0.908 10 C -0.002 4.002 11 C -0.575 4.575 12 H 0.073 0.927 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 O -0.305 6.305 20 H 0.109 0.891 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.128 0.872 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.137 0.863 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.016 0.984 31 H 0.043 0.957 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.625 8.929 9.109 14.373 hybrid contribution 0.124 -0.565 -1.117 1.257 sum -6.501 8.364 7.992 13.270 Atomic orbital electron populations 1.22252 0.92359 1.02943 1.03970 1.22997 0.93572 0.89630 0.74898 1.22509 1.07078 0.94141 0.96810 1.22957 0.92603 1.03396 1.02066 1.22984 0.97704 0.99661 0.97065 1.88724 1.69631 1.42247 1.30003 1.24266 0.96055 0.89654 0.94654 1.23987 0.99000 0.83354 0.93029 0.90809 1.18965 0.92722 0.94418 0.94130 1.21450 0.98124 1.38922 0.99031 0.92727 1.25899 0.95185 0.95431 1.02936 1.70055 1.08121 1.42780 1.36138 0.85520 0.78310 0.78604 0.78752 1.19785 1.20454 1.18886 1.89335 1.86021 1.22916 1.32234 0.89098 0.90438 0.92502 0.87184 0.89191 0.87899 0.86343 0.88141 0.91421 0.86311 0.98352 0.95682 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 9.09 71.98 0.65 -3.85 16 2 C 0.27 9.15 1.26 30.60 0.04 9.19 16 3 C -0.19 -5.57 5.46 -10.79 -0.06 -5.63 16 4 C -0.17 -4.61 9.89 30.62 0.30 -4.31 16 5 C -0.14 -3.03 9.70 30.62 0.30 -2.74 16 6 O -0.38 -13.09 9.24 -126.22 -1.17 -14.26 16 7 C 0.03 1.06 7.54 72.64 0.55 1.61 16 8 C 0.06 2.74 3.37 31.25 0.11 2.84 16 9 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 10 C 0.03 1.84 4.75 29.85 0.14 1.99 16 11 C -0.54 -31.25 9.07 25.60 0.23 -31.01 16 12 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 13 C 0.00 0.21 5.46 84.65 0.46 0.67 16 14 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 15 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 19 O -0.38 -17.00 10.68 -126.22 -1.35 -18.34 16 20 H 0.09 2.12 7.60 -2.39 -0.02 2.10 16 21 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 24 H 0.09 2.61 7.12 -2.38 -0.02 2.59 16 25 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.10 2.14 7.89 -2.39 -0.02 2.12 16 28 H 0.07 2.45 8.04 -2.38 -0.02 2.44 16 29 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.03 1.35 8.14 -2.38 -0.02 1.34 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -65.44 269.61 3.60 -61.84 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.08 Total: 11.35 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.72 Total: -31.24 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.28 Total: -56.30 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -2.51 Total: -32.60 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.44 3.60 -61.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.283 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds