Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47380 * 2 1 4 4 C 1.34229 * 116.99807 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00434 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99959 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.43379 * 61.08689 * 6 4 3 8 8 C 1.54267 * 110.48252 * 298.54827 * 6 4 3 9 9 C 1.53881 * 106.59605 * 217.71309 * 8 6 4 10 10 C 1.54266 * 106.59623 * 359.97438 * 9 8 6 11 11 H 1.08998 * 110.48947 * 264.93152 * 10 9 8 12 12 C 1.50703 * 110.48360 * 142.29271 * 10 9 8 13 13 H 1.08001 * 119.99622 * 275.35434 * 12 10 9 14 14 C 1.37876 * 120.00107 * 95.35100 * 12 10 9 15 15 N 1.31515 * 119.99880 * 184.35826 * 14 12 10 16 16 Si 1.86802 * 120.00217 * 4.36106 * 14 12 10 17 17 H 1.48498 * 109.47073 * 84.81395 * 16 14 12 18 18 H 1.48492 * 109.47218 * 204.81771 * 16 14 12 19 19 H 1.48502 * 109.46794 * 324.81841 * 16 14 12 20 20 C 1.54881 * 110.48723 * 183.77260 * 6 4 3 21 21 H 1.08996 * 109.47498 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46489 * 299.99871 * 1 2 3 23 23 H 1.08996 * 109.47200 * 59.99197 * 1 2 3 24 24 H 1.08996 * 109.47200 * 120.00803 * 2 1 3 25 25 H 1.09003 * 109.46489 * 240.00129 * 2 1 3 26 26 H 1.09003 * 110.03700 * 336.99253 * 8 6 4 27 27 H 1.09000 * 110.03624 * 98.42993 * 8 6 4 28 28 H 1.08997 * 110.03378 * 119.28410 * 9 8 6 29 29 H 1.09002 * 110.03116 * 240.66302 * 9 8 6 30 30 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 31 31 H 1.09000 * 110.75697 * 274.93701 * 20 6 4 32 32 H 1.09004 * 110.75914 * 38.30400 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5446 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9209 2.9372 0.0000 7 1 3.6105 3.4771 0.8945 8 6 3.4885 3.7008 -1.2688 9 6 4.6956 4.5508 -1.7030 10 6 5.8190 4.2744 -0.6826 11 1 5.8170 5.0316 0.1014 12 6 7.1585 4.2306 -1.3718 13 1 7.4989 3.3151 -1.8326 14 6 7.9492 5.3593 -1.4143 15 7 9.0783 5.3462 -2.0885 16 14 7.4168 6.9072 -0.5141 17 1 7.8473 6.8274 0.9048 18 1 8.0413 8.0921 -1.1551 19 1 5.9384 7.0322 -0.5765 20 6 5.4659 2.8848 -0.0962 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.2253 2.9959 -2.0574 27 1 2.6388 4.3459 -1.0450 28 1 5.0180 4.2583 -2.7023 29 1 4.4313 5.6082 -1.6909 30 1 9.6344 6.1404 -2.1187 31 1 5.9103 2.7579 0.8909 32 1 5.7842 2.0888 -0.7695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260369049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = -112.125715 kcal Electronic energy + Delta-G solvation = -14186.611793 eV Core-core repulsion = 11725.310886 eV Total energy + Delta-G solvation = -2461.300907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.34638 -37.38915 -36.12705 -32.56035 -31.75278 -29.32188 -28.11982 -24.62282 -23.16508 -21.66769 -19.61728 -19.09008 -17.46298 -16.89445 -16.48098 -15.82675 -15.02815 -14.20907 -13.83072 -13.42679 -12.99016 -12.78102 -12.54814 -12.32226 -11.96521 -11.71152 -11.46345 -10.96192 -10.63783 -10.54972 -10.48204 -10.29221 -10.07411 -9.86049 -9.65935 -9.52202 -8.98576 -8.50542 -6.05490 -4.03860 2.50390 2.87299 3.30117 3.38212 3.39527 4.43692 4.82610 4.83391 4.95265 5.07126 5.18035 5.29879 5.41352 5.49465 5.65382 5.74169 5.85553 6.01808 6.23790 6.25503 6.36816 6.57467 6.60868 6.73053 6.91747 6.98057 7.26716 7.44268 7.79477 8.04200 8.56893 9.00584 9.57431 11.07881 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.065600 B = 0.006809 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.725301 B = 4110.930581 C = 4283.598475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.361 6.361 4 C 0.468 3.532 5 O -0.508 6.508 6 C -0.092 4.092 7 H 0.104 0.896 8 C -0.108 4.108 9 C -0.125 4.125 10 C 0.014 3.986 11 H 0.036 0.964 12 C -0.507 4.507 13 H 0.074 0.926 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.264 1.264 20 C -0.091 4.091 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.263 0.737 31 H 0.060 0.940 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.859 -5.361 4.495 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.279 6.279 4 C 0.312 3.688 5 O -0.394 6.394 6 C -0.112 4.112 7 H 0.122 0.878 8 C -0.145 4.145 9 C -0.163 4.163 10 C -0.005 4.005 11 H 0.054 0.946 12 C -0.545 4.545 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.189 1.189 20 C -0.129 4.129 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.494 -5.568 4.429 17.049 hybrid contribution -0.194 0.652 0.452 0.817 sum -15.688 -4.916 4.881 17.150 Atomic orbital electron populations 1.21788 0.92933 1.02649 1.03426 1.22955 0.95141 0.81102 1.02392 1.86550 1.25413 1.31595 1.84342 1.24148 0.79878 0.93265 0.71527 1.90635 1.60354 1.43263 1.45197 1.22187 0.99059 0.88341 1.01569 0.87815 1.22109 0.99307 0.98317 0.94808 1.22569 0.94269 0.97639 1.01828 1.19952 0.94816 0.92033 0.93740 0.94595 1.21012 0.99720 0.98722 1.35004 0.90768 1.25089 0.94718 0.98518 0.94914 1.69913 1.13099 1.29591 1.41329 0.86844 0.79316 0.82995 0.80249 1.20232 1.21668 1.18922 1.22558 0.88042 1.00932 1.01372 0.90537 0.91607 0.91518 0.91531 0.91439 0.92382 0.91890 0.91370 0.93245 0.92686 0.92124 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -5.33 10.20 -39.25 -0.40 -5.73 16 4 C 0.47 8.04 7.12 36.01 0.26 8.30 16 5 O -0.51 -10.04 15.51 -18.75 -0.29 -10.33 16 6 C -0.09 -1.58 3.36 -90.11 -0.30 -1.89 16 7 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 8 C -0.11 -1.80 6.34 -25.61 -0.16 -1.97 16 9 C -0.12 -2.54 6.36 -25.61 -0.16 -2.70 16 10 C 0.01 0.31 2.37 -90.10 -0.21 0.10 16 11 H 0.04 0.82 5.55 -51.93 -0.29 0.53 16 12 C -0.51 -14.13 8.78 -34.44 -0.30 -14.44 16 13 H 0.07 2.27 8.03 -52.49 -0.42 1.85 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 16 Si 0.88 21.28 26.99 -169.99 -4.59 16.69 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.26 -6.05 6.71 56.52 0.38 -5.67 16 20 C -0.09 -1.88 5.32 -24.73 -0.13 -2.01 16 21 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 25 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.06 0.95 7.83 -51.93 -0.41 0.54 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.46 7.83 -51.93 -0.41 1.06 16 29 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.69 7.41 -51.93 -0.39 1.31 16 LS Contribution 267.23 15.07 4.03 4.03 Total: -1.00 -31.01 267.23 -5.84 -36.85 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.86 Total: -2.05 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.50 Total: -12.70 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.69 Total: -16.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.01 -5.84 -36.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.276 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds