Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47380 * 2 1 4 4 C 1.34229 * 116.99807 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00434 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99959 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.43379 * 61.08689 * 6 4 3 8 8 C 1.54267 * 110.48252 * 298.54827 * 6 4 3 9 9 C 1.53881 * 106.59605 * 217.71309 * 8 6 4 10 10 C 1.54266 * 106.59623 * 359.97438 * 9 8 6 11 11 H 1.08998 * 110.48947 * 264.93152 * 10 9 8 12 12 C 1.50703 * 110.48360 * 142.29271 * 10 9 8 13 13 H 1.08001 * 119.99622 * 275.35434 * 12 10 9 14 14 C 1.37876 * 120.00107 * 95.35100 * 12 10 9 15 15 N 1.31515 * 119.99880 * 184.35826 * 14 12 10 16 16 Si 1.86802 * 120.00217 * 4.36106 * 14 12 10 17 17 H 1.48498 * 109.47073 * 84.81395 * 16 14 12 18 18 H 1.48492 * 109.47218 * 204.81771 * 16 14 12 19 19 H 1.48502 * 109.46794 * 324.81841 * 16 14 12 20 20 C 1.54881 * 110.48723 * 183.77260 * 6 4 3 21 21 H 1.08996 * 109.47498 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46489 * 299.99871 * 1 2 3 23 23 H 1.08996 * 109.47200 * 59.99197 * 1 2 3 24 24 H 1.08996 * 109.47200 * 120.00803 * 2 1 3 25 25 H 1.09003 * 109.46489 * 240.00129 * 2 1 3 26 26 H 1.09003 * 110.03700 * 336.99253 * 8 6 4 27 27 H 1.09000 * 110.03624 * 98.42993 * 8 6 4 28 28 H 1.08997 * 110.03378 * 119.28410 * 9 8 6 29 29 H 1.09002 * 110.03116 * 240.66302 * 9 8 6 30 30 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 31 31 H 1.09000 * 110.75697 * 274.93701 * 20 6 4 32 32 H 1.09004 * 110.75914 * 38.30400 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5446 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9209 2.9372 0.0000 7 1 3.6105 3.4771 0.8945 8 6 3.4885 3.7008 -1.2688 9 6 4.6956 4.5508 -1.7030 10 6 5.8190 4.2744 -0.6826 11 1 5.8170 5.0316 0.1014 12 6 7.1585 4.2306 -1.3718 13 1 7.4989 3.3151 -1.8326 14 6 7.9492 5.3593 -1.4143 15 7 9.0783 5.3462 -2.0885 16 14 7.4168 6.9072 -0.5141 17 1 7.8473 6.8274 0.9048 18 1 8.0413 8.0921 -1.1551 19 1 5.9384 7.0322 -0.5765 20 6 5.4659 2.8848 -0.0962 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.2253 2.9959 -2.0574 27 1 2.6388 4.3459 -1.0450 28 1 5.0180 4.2583 -2.7023 29 1 4.4313 5.6082 -1.6909 30 1 9.6344 6.1404 -2.1187 31 1 5.9103 2.7579 0.8909 32 1 5.7842 2.0888 -0.7695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260369049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = -130.998456 kcal Electronic energy + Delta-G solvation = -14187.430176 eV Core-core repulsion = 11725.310886 eV Total energy + Delta-G solvation = -2462.119291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66460 -38.87017 -37.49430 -34.63064 -32.69767 -31.01791 -29.68048 -26.40137 -24.35477 -22.93417 -21.01606 -20.83256 -19.24042 -18.45126 -17.71266 -17.24102 -16.46928 -16.04337 -15.02991 -14.83502 -14.61206 -14.17266 -14.07886 -13.61298 -13.22385 -12.91783 -12.79334 -12.48628 -12.26886 -12.08542 -12.00359 -11.65356 -11.63712 -11.49950 -11.33250 -11.28430 -10.90579 -10.64593 -8.25483 -6.29594 1.17076 1.40278 1.41768 1.53339 1.70160 2.39929 3.08468 3.55003 3.82187 3.93939 4.01889 4.10944 4.24640 4.36890 4.59662 4.63208 4.74171 4.85570 4.89443 4.94224 4.95885 5.04894 5.15826 5.25838 5.40918 5.45025 5.53146 5.63719 5.79081 6.37706 6.75185 6.76862 7.35373 8.92039 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.065600 B = 0.006809 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.725301 B = 4110.930581 C = 4283.598475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.355 6.355 4 C 0.474 3.526 5 O -0.543 6.543 6 C -0.085 4.085 7 H 0.139 0.861 8 C -0.097 4.097 9 C -0.123 4.123 10 C 0.007 3.993 11 H 0.049 0.951 12 C -0.515 4.515 13 H 0.022 0.978 14 C 0.005 3.995 15 N -0.956 5.956 16 Si 0.949 3.051 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.233 1.233 20 C -0.091 4.091 21 H 0.100 0.900 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.145 -4.184 6.030 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.272 6.272 4 C 0.319 3.681 5 O -0.433 6.433 6 C -0.104 4.104 7 H 0.157 0.843 8 C -0.135 4.135 9 C -0.161 4.161 10 C -0.012 4.012 11 H 0.067 0.933 12 C -0.553 4.553 13 H 0.040 0.960 14 C -0.191 4.191 15 N -0.596 5.596 16 Si 0.772 3.228 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.156 1.156 20 C -0.129 4.129 21 H 0.118 0.882 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.828 -4.408 5.967 20.237 hybrid contribution 0.853 0.134 -0.081 0.867 sum -17.975 -4.274 5.886 19.391 Atomic orbital electron populations 1.21809 0.89935 1.04375 1.03866 1.23317 0.97426 0.79533 1.02289 1.86528 1.23611 1.33472 1.83602 1.24065 0.80580 0.92783 0.70710 1.90635 1.61373 1.44323 1.46958 1.22092 0.95937 0.88952 1.03385 0.84325 1.22043 0.98712 0.98233 0.94468 1.22409 0.94747 0.99286 0.99640 1.19967 0.92972 0.93776 0.94458 0.93293 1.21297 1.02364 0.96844 1.34820 0.96011 1.26086 0.94559 1.02651 0.95823 1.70089 1.14978 1.30921 1.43653 0.85705 0.80667 0.77570 0.78809 1.19134 1.21768 1.15581 1.22369 0.91528 0.98522 1.00500 0.88189 0.90942 0.91244 0.91419 0.91959 0.92269 0.87970 0.93850 0.91734 0.92622 0.91845 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 10.29 71.98 0.74 -1.18 16 2 C 0.05 1.02 6.19 71.98 0.45 1.46 16 3 O -0.36 -9.48 10.20 -51.41 -0.52 -10.01 16 4 C 0.47 15.39 7.12 71.24 0.51 15.89 16 5 O -0.54 -21.36 15.51 21.97 0.34 -21.02 16 6 C -0.08 -2.66 3.36 -10.47 -0.04 -2.70 16 7 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 8 C -0.10 -2.91 6.34 31.32 0.20 -2.72 16 9 C -0.12 -4.75 6.36 31.32 0.20 -4.55 16 10 C 0.01 0.32 2.37 -10.46 -0.02 0.30 16 11 H 0.05 2.09 5.55 -2.39 -0.01 2.08 16 12 C -0.52 -29.79 8.78 25.60 0.22 -29.56 16 13 H 0.02 1.43 8.03 -2.91 -0.02 1.40 16 14 C 0.00 0.29 5.47 84.65 0.46 0.75 16 15 N -0.96 -60.66 13.96 21.45 0.30 -60.36 16 16 Si 0.95 43.17 26.99 68.60 1.85 45.02 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.23 -9.35 6.71 99.48 0.67 -8.68 16 20 C -0.09 -3.74 5.32 31.89 0.17 -3.57 16 21 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 25 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 26 H 0.06 1.77 7.83 -2.39 -0.02 1.75 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.04 1.86 7.83 -2.39 -0.02 1.84 16 29 H 0.06 2.29 7.97 -2.39 -0.02 2.27 16 30 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.04 2.03 7.41 -2.38 -0.02 2.02 16 Total: -1.00 -70.26 267.23 5.90 -64.36 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.04 Total: 7.87 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 2.89 Total: -25.87 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.30 Total: -60.36 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.18 Total: -31.03 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.85 Total: 45.02 kcal Total: -70.26 5.90 -64.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.634 kcal (2) G-P(sol) polarization free energy of solvation -70.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds