Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48499 * 109.46915 * 239.99889 * 3 2 1 5 5 H 1.48499 * 109.47013 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47053 * 119.99844 * 3 2 1 7 7 C 1.37882 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99700 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.19020 * 59.56371 * 9 7 2 11 11 C 1.47042 * 109.28847 * 179.16347 * 9 7 2 12 12 C 1.52561 * 114.29850 * 183.11213 * 11 9 7 13 13 C 1.50876 * 109.34942 * 274.93774 * 12 11 9 14 14 C 1.53943 * 110.09770 * 91.88537 * 13 12 11 15 15 N 1.47607 * 112.14292 * 319.44053 * 14 13 12 16 16 C 1.34775 * 118.64723 * 137.85969 * 15 14 13 17 17 N 1.34774 * 120.00560 * 175.01766 * 16 15 14 18 18 O 1.21584 * 119.99632 * 355.02370 * 16 15 14 19 19 C 1.44586 * 122.71499 * 317.88097 * 15 14 13 20 20 H 0.96998 * 120.00075 * 0.02562 * 1 2 3 21 21 H 1.09003 * 108.55973 * 61.84448 * 11 9 7 22 22 H 1.08998 * 108.38102 * 304.25029 * 11 9 7 23 23 H 1.09000 * 109.49706 * 154.97415 * 12 11 9 24 24 H 1.08998 * 109.49119 * 34.89771 * 12 11 9 25 25 H 1.09001 * 109.36924 * 331.69544 * 13 12 11 26 26 H 1.09009 * 109.26638 * 212.00923 * 13 12 11 27 27 H 1.08997 * 108.95241 * 198.75286 * 14 13 12 28 28 H 1.09003 * 108.94729 * 80.11927 * 14 13 12 29 29 H 0.97005 * 119.99605 * 5.06150 * 17 16 15 30 30 H 0.96997 * 120.00119 * 185.05985 * 17 16 15 31 31 H 1.09001 * 109.45058 * 210.73325 * 19 15 14 32 32 H 1.08993 * 109.44926 * 330.68566 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6206 -2.5481 -0.8895 11 6 2.2100 -3.6137 -0.0223 12 6 1.5661 -4.9945 -0.1010 13 6 1.2031 -5.4566 1.2887 14 6 -0.2422 -5.0449 1.6224 15 7 -0.5592 -3.6864 1.1398 16 6 -1.7562 -3.4698 0.5594 17 7 -2.1149 -2.2214 0.2000 18 8 -2.5124 -4.4007 0.3602 19 6 0.3615 -2.5785 1.2636 20 1 -0.4850 0.8400 -0.0004 21 1 2.8170 -3.5659 0.8818 22 1 2.8650 -3.4877 -0.8845 23 1 2.2687 -5.6987 -0.5464 24 1 0.6660 -4.9417 -0.7134 25 1 1.8836 -5.0035 2.0096 26 1 1.2910 -6.5419 1.3412 27 1 -0.3790 -5.0774 2.7032 28 1 -0.9282 -5.7540 1.1590 29 1 -1.4838 -1.4903 0.2912 30 1 -3.0039 -2.0540 -0.1499 31 1 -0.1998 -1.6504 1.3714 32 1 0.9910 -2.7261 2.1411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -60.285005 kcal Electronic energy + Delta-G solvation = -15196.611519 eV Core-core repulsion = 12769.851344 eV Total energy + Delta-G solvation = -2426.760174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25920 -38.56713 -35.54416 -34.93543 -33.61256 -32.47340 -28.11036 -26.80026 -25.41050 -22.70653 -21.11929 -20.14976 -18.94841 -18.40503 -17.78098 -16.66299 -16.30264 -15.96138 -15.35972 -15.04142 -14.82419 -14.19778 -13.95292 -13.66924 -13.00927 -12.87270 -12.75138 -12.41870 -12.20298 -12.14768 -11.56595 -11.26959 -11.20036 -10.95927 -10.93270 -10.44748 -10.37686 -9.24356 -8.17689 -6.23397 1.48668 1.50779 1.57042 2.17464 2.34455 2.45212 3.15766 3.68597 3.96711 4.13679 4.30054 4.45679 4.53497 4.64353 4.82601 4.96927 5.11604 5.14958 5.16326 5.28744 5.43561 5.53380 5.62885 5.79831 5.89972 5.95982 6.21968 6.27813 6.44182 6.84345 7.20736 7.48315 7.88295 8.92295 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.034083 B = 0.012274 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.328514 B = 2280.648355 C = 2896.179698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.033 3.967 10 H -0.012 1.012 11 C -0.099 4.099 12 C -0.111 4.111 13 C -0.119 4.119 14 C 0.121 3.879 15 N -0.617 5.617 16 C 0.693 3.307 17 N -0.863 5.863 18 O -0.660 6.660 19 C 0.117 3.883 20 H 0.269 0.731 21 H 0.056 0.944 22 H 0.036 0.964 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.427 0.573 30 H 0.404 0.596 31 H 0.087 0.913 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -4.274 3.510 6.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.014 3.986 10 H 0.006 0.994 11 C -0.137 4.137 12 C -0.149 4.149 13 C -0.157 4.157 14 C -0.001 4.001 15 N -0.352 5.352 16 C 0.392 3.608 17 N -0.438 5.438 18 O -0.545 6.545 19 C -0.006 4.006 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.269 0.731 30 H 0.234 0.766 31 H 0.104 0.896 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.976 -4.790 3.500 6.253 hybrid contribution 0.120 1.525 -0.428 1.588 sum 2.096 -3.265 3.072 4.949 Atomic orbital electron populations 1.69226 1.06965 1.27781 1.51667 1.25554 0.95615 1.01975 0.94246 0.85567 0.78312 0.79016 0.78396 1.20656 1.20957 1.19771 1.21517 0.93266 0.91455 1.50428 0.92568 1.18248 0.93777 0.93473 0.93138 0.99357 1.20469 0.98410 0.94161 1.00655 1.21054 0.99639 0.96786 0.97433 1.21734 0.94816 1.02224 0.96924 1.21816 0.97662 0.81936 0.98699 1.47128 1.14885 1.11412 1.61817 1.16267 0.82501 0.83699 0.78300 1.43760 1.20336 1.09771 1.69944 1.90766 1.55002 1.43595 1.65173 1.21788 0.91997 0.88015 0.98801 0.92160 0.92526 0.94476 0.90659 0.94965 0.90835 0.88333 0.91284 0.91062 0.73133 0.76612 0.89561 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.12 9.26 21.45 0.20 -44.92 16 2 C 0.02 1.21 5.26 84.66 0.45 1.65 16 3 Si 0.96 39.78 29.54 68.60 2.03 41.80 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.53 -26.34 8.49 25.60 0.22 -26.12 16 8 H 0.06 2.77 7.73 -2.91 -0.02 2.75 16 9 C 0.03 1.55 1.98 -12.75 -0.03 1.53 16 10 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 11 C -0.10 -3.90 4.31 28.60 0.12 -3.78 16 12 C -0.11 -3.75 5.51 29.76 0.16 -3.59 16 13 C -0.12 -3.40 5.71 30.22 0.17 -3.23 16 14 C 0.12 4.14 6.13 86.49 0.53 4.67 16 15 N -0.62 -25.62 2.24 -836.15 -1.87 -27.49 16 16 C 0.69 31.74 8.48 179.06 1.52 33.26 16 17 N -0.86 -36.89 8.71 -184.75 -1.61 -38.50 16 18 O -0.66 -32.89 16.45 -3.98 -0.07 -32.95 16 19 C 0.12 5.11 4.40 87.38 0.38 5.49 16 20 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 21 H 0.06 2.09 7.36 -2.39 -0.02 2.07 16 22 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.03 1.27 7.48 -2.39 -0.02 1.25 16 25 H 0.07 1.99 7.32 -2.39 -0.02 1.98 16 26 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.59 6.91 -2.39 -0.02 2.58 16 29 H 0.43 19.08 4.12 -92.70 -0.38 18.70 16 30 H 0.40 15.30 8.93 -92.71 -0.83 14.47 16 31 H 0.09 4.10 4.31 -2.39 -0.01 4.09 16 32 H 0.06 2.49 8.06 -2.39 -0.02 2.47 16 Total: -1.00 -57.18 248.98 2.13 -55.05 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.08 Total: 37.14 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 3.53 Total: 9.88 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.28 Total: -110.91 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.07 Total: -32.95 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Total: -57.18 2.13 -55.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.239 kcal (2) G-P(sol) polarization free energy of solvation -57.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds