Wall clock time and date at job start Mon Mar 30 2020 02:31:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53007 * 109.46811 * 2 1
4 4 C 1.52994 * 109.47366 * 239.99900 * 2 1 3
5 5 O 1.45203 * 109.47116 * 119.99833 * 2 1 3
6 6 C 1.34223 * 116.99898 * 60.00124 * 5 2 1
7 7 O 1.20831 * 120.00022 * 0.02562 * 6 5 2
8 8 C 1.50699 * 120.00242 * 179.97438 * 6 5 2
9 9 H 1.09002 * 115.55636 * 34.29810 * 8 6 5
10 10 C 1.53000 * 117.50321 * 248.61411 * 8 6 5
11 11 C 1.52997 * 117.50247 * 179.97438 * 8 6 5
12 12 H 1.08999 * 117.49685 * 0.02562 * 11 8 6
13 13 C 1.50697 * 117.49950 * 214.97927 * 11 8 6
14 14 H 1.07997 * 120.00260 * 359.97438 * 13 11 8
15 15 C 1.37882 * 119.99607 * 179.97438 * 13 11 8
16 16 N 1.31510 * 120.00103 * 0.02562 * 15 13 11
17 17 Si 1.86801 * 119.99760 * 180.02562 * 15 13 11
18 18 H 1.48502 * 109.47069 * 0.02562 * 17 15 13
19 19 H 1.48502 * 109.47142 * 119.99985 * 17 15 13
20 20 H 1.48497 * 109.47215 * 240.00218 * 17 15 13
21 21 H 1.08989 * 109.47534 * 299.99748 * 1 2 3
22 22 H 1.08999 * 109.46680 * 60.00544 * 1 2 3
23 23 H 1.09000 * 109.46958 * 179.97438 * 1 2 3
24 24 H 1.08993 * 109.46777 * 179.97438 * 3 2 1
25 25 H 1.09000 * 109.46752 * 299.99683 * 3 2 1
26 26 H 1.09002 * 109.47145 * 59.99964 * 3 2 1
27 27 H 1.09000 * 109.47541 * 300.00205 * 4 2 1
28 28 H 1.09004 * 109.47175 * 60.00319 * 4 2 1
29 29 H 1.09000 * 109.46986 * 179.97438 * 4 2 1
30 30 H 1.08990 * 117.49990 * 145.01584 * 10 8 6
31 31 H 1.09004 * 117.49237 * 359.97438 * 10 8 6
32 32 H 0.97006 * 119.99641 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0401 -0.7212 -1.2492
5 8 2.0141 -0.6845 1.1856
6 6 1.6534 -1.9683 1.3379
7 8 0.9568 -2.5027 0.5078
8 6 2.1183 -2.7437 2.5436
9 1 2.2078 -2.1697 3.4659
10 6 3.1261 -3.8715 2.3128
11 6 1.6730 -4.2028 2.6601
12 1 1.0441 -4.6020 1.8644
13 6 1.3920 -4.7364 4.0411
14 1 1.5078 -4.0946 4.9019
15 6 0.9870 -6.0441 4.2056
16 7 0.8465 -6.8258 3.1574
17 14 0.6380 -6.7054 5.9174
18 1 0.8688 -5.6334 6.9188
19 1 -0.7741 -7.1586 5.9946
20 1 1.5413 -7.8498 6.1996
21 1 -0.3634 0.5137 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 3.1299 1.4426 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6766 1.9564 0.8900
27 1 1.6768 -1.7489 -1.2492
28 1 1.6768 -0.2074 -2.1392
29 1 3.1301 -0.7208 -1.2493
30 1 3.8785 -4.0396 3.0833
31 1 3.4525 -4.0530 1.2888
32 1 0.5619 -7.7459 3.2732
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260581314.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:31:06
Heat of formation + Delta-G solvation = -77.612453 kcal
Electronic energy + Delta-G solvation = -14246.956493 eV
Core-core repulsion = 11787.152193 eV
Total energy + Delta-G solvation = -2459.804300 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.120 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.29358 -37.08895 -35.22868 -33.70880 -32.18925 -27.31623 -27.25255 -26.02666
-24.17823 -20.93622 -20.09651 -18.85790 -17.11768 -16.17307 -15.89196 -15.41086
-14.64230 -14.12277 -13.96694 -13.51622 -13.02417 -12.41708 -12.09498 -11.87015
-11.75266 -11.63932 -11.60499 -11.20298 -11.06793 -10.96746 -10.80750 -10.42863
-10.05954 -9.72065 -9.35946 -9.15057 -8.93519 -8.40442 -6.16247 -4.18273
2.88233 3.18084 3.25571 3.33113 3.37527 4.33475 4.85697 4.87047
4.94829 5.03862 5.27670 5.43686 5.52967 5.61145 5.75638 5.81969
5.96898 6.02033 6.04192 6.17503 6.23902 6.40778 6.49230 6.55064
6.74049 6.96657 7.09652 7.59219 7.82329 8.27103 8.54630 8.84915
9.42975 10.93965
Molecular weight = 212.12amu
Principal moments of inertia in cm(-1)
A = 0.062033 B = 0.006513 C = 0.006470
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 451.266446 B = 4298.259177 C = 4326.336095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.112 3.888
3 C -0.138 4.138
4 C -0.182 4.182
5 O -0.355 6.355
6 C 0.497 3.503
7 O -0.510 6.510
8 C -0.210 4.210
9 H 0.114 0.886
10 C -0.180 4.180
11 C 0.072 3.928
12 H 0.094 0.906
13 C -0.503 4.503
14 H 0.064 0.936
15 C 0.069 3.931
16 N -0.880 5.880
17 Si 0.901 3.099
18 H -0.270 1.270
19 H -0.281 1.281
20 H -0.281 1.281
21 H 0.059 0.941
22 H 0.065 0.935
23 H 0.086 0.914
24 H 0.064 0.936
25 H 0.073 0.927
26 H 0.064 0.936
27 H 0.085 0.915
28 H 0.065 0.935
29 H 0.058 0.942
30 H 0.091 0.909
31 H 0.072 0.928
32 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.983 12.041 -5.147 13.245
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.076 3.924
3 C -0.195 4.195
4 C -0.239 4.239
5 O -0.274 6.274
6 C 0.343 3.657
7 O -0.398 6.398
8 C -0.230 4.230
9 H 0.132 0.868
10 C -0.218 4.218
11 C 0.054 3.946
12 H 0.112 0.888
13 C -0.540 4.540
14 H 0.082 0.918
15 C -0.135 4.135
16 N -0.516 5.516
17 Si 0.728 3.272
18 H -0.195 1.195
19 H -0.207 1.207
20 H -0.207 1.207
21 H 0.078 0.922
22 H 0.084 0.916
23 H 0.105 0.895
24 H 0.083 0.917
25 H 0.092 0.908
26 H 0.083 0.917
27 H 0.104 0.896
28 H 0.084 0.916
29 H 0.077 0.923
30 H 0.110 0.890
31 H 0.091 0.909
32 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 1.708 11.717 -5.481 13.048
hybrid contribution -0.146 -0.192 0.683 0.725
sum 1.562 11.525 -4.798 12.581
Atomic orbital electron populations
1.22479 0.94380 1.04983 1.02096 1.22058 0.94282 0.92119 0.83923
1.21820 1.02002 0.93134 1.02575 1.22476 1.01458 1.03460 0.96498
1.86587 1.70000 1.26499 1.44270 1.23174 0.76542 0.79358 0.86659
1.90502 1.35661 1.69930 1.43681 1.22120 1.13344 0.93331 0.94185
0.86794 1.23100 0.97473 1.00652 1.00568 1.20151 0.91246 0.84001
0.99218 0.88837 1.20698 1.46154 0.96358 0.90776 0.91796 1.25058
0.94249 0.96852 0.97374 1.69990 1.45224 1.07016 1.29323 0.86394
0.78068 0.78988 0.83741 1.19457 1.20708 1.20723 0.92184 0.91621
0.89510 0.91698 0.90835 0.91673 0.89582 0.91600 0.92254 0.89018
0.90909 0.92543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.62 8.37 37.16 0.31 -2.31 16
2 C 0.11 1.66 1.13 -90.62 -0.10 1.56 16
3 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16
4 C -0.18 -2.59 8.37 37.15 0.31 -2.27 16
5 O -0.36 -6.50 9.89 -39.24 -0.39 -6.89 16
6 C 0.50 10.48 7.05 36.01 0.25 10.73 16
7 O -0.51 -11.56 11.76 -18.75 -0.22 -11.78 16
8 C -0.21 -4.68 6.00 -91.77 -0.55 -5.23 16
9 H 0.11 2.40 8.14 -51.93 -0.42 1.98 16
10 C -0.18 -4.06 9.94 -26.72 -0.27 -4.33 16
11 C 0.07 1.89 5.09 -91.76 -0.47 1.42 16
12 H 0.09 2.71 7.43 -51.93 -0.39 2.33 16
13 C -0.50 -13.87 9.20 -34.44 -0.32 -14.19 16
14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16
15 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16
16 N -0.88 -25.61 13.13 55.43 0.73 -24.88 16
17 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16
18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
21 H 0.06 0.83 8.14 -51.94 -0.42 0.40 16
22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
23 H 0.09 1.50 5.89 -51.93 -0.31 1.20 16
24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.09 1.47 5.89 -51.93 -0.31 1.16 16
28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16
29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
30 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16
31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16
32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
LS Contribution 271.85 15.07 4.10 4.10
Total: -1.00 -29.49 271.85 -6.17 -35.66
By element:
Atomic # 1 Polarization: 6.72 SS G_CDS: -4.77 Total: 1.95 kcal
Atomic # 6 Polarization: -13.42 SS G_CDS: -0.60 Total: -14.02 kcal
Atomic # 7 Polarization: -25.61 SS G_CDS: 0.73 Total: -24.88 kcal
Atomic # 8 Polarization: -18.06 SS G_CDS: -0.61 Total: -18.67 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal
Total LS contribution 4.10 Total: 4.10 kcal
Total: -29.49 -6.17 -35.66 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260581314.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.950 kcal
(2) G-P(sol) polarization free energy of solvation -29.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds