Wall clock time and date at job start Mon Mar 30 2020 02:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46848 * 2 1 4 4 C 1.52992 * 109.46981 * 240.00270 * 2 1 3 5 5 O 1.45195 * 109.47189 * 119.99924 * 2 1 3 6 6 C 1.34233 * 117.00056 * 60.00357 * 5 2 1 7 7 O 1.20828 * 119.99774 * 359.97438 * 6 5 2 8 8 C 1.50697 * 120.00128 * 179.97438 * 6 5 2 9 9 H 1.09002 * 115.54932 * 325.58210 * 8 6 5 10 10 C 1.53002 * 117.49992 * 111.25372 * 8 6 5 11 11 C 1.53000 * 117.50034 * 179.91145 * 8 6 5 12 12 H 1.09008 * 117.49673 * 359.97438 * 11 8 6 13 13 C 1.50692 * 117.50104 * 144.97111 * 11 8 6 14 14 H 1.08000 * 119.99996 * 0.02562 * 13 11 8 15 15 C 1.37882 * 120.00273 * 179.97438 * 13 11 8 16 16 N 1.31510 * 119.99796 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99999 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46826 * 60.00673 * 17 15 13 19 19 H 1.48501 * 109.46897 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47117 * 300.00333 * 17 15 13 21 21 H 1.09008 * 109.46898 * 299.99322 * 1 2 3 22 22 H 1.08996 * 109.47887 * 59.99910 * 1 2 3 23 23 H 1.09008 * 109.46917 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46963 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47170 * 300.00529 * 3 2 1 26 26 H 1.09004 * 109.46983 * 59.99890 * 3 2 1 27 27 H 1.09001 * 109.47264 * 299.99835 * 4 2 1 28 28 H 1.09005 * 109.47482 * 59.99482 * 4 2 1 29 29 H 1.08999 * 109.47541 * 179.97438 * 4 2 1 30 30 H 1.09000 * 117.49996 * 215.00670 * 10 8 6 31 31 H 1.08999 * 117.49664 * 0.02562 * 10 8 6 32 32 H 0.97002 * 120.00304 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9560 -2.5025 0.5082 8 6 2.1184 -2.7437 2.5435 9 1 3.1133 -2.4909 2.9100 10 6 1.0636 -3.1394 3.5788 11 6 1.6719 -4.2024 2.6607 12 1 1.0415 -4.6012 1.8658 13 6 2.6415 -5.1799 3.2733 14 1 3.6098 -4.8405 3.6104 15 6 2.2921 -6.5072 3.4045 16 7 1.1129 -6.9203 2.9945 17 14 3.4939 -7.7186 4.1646 18 1 3.8150 -7.2936 5.5508 19 1 2.8829 -9.0719 4.1903 20 1 4.7392 -7.7536 3.3565 21 1 -0.3633 0.5138 0.8901 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 3.1299 1.4425 -0.0005 25 1 1.6765 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6767 -1.7488 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7208 -1.2495 30 1 1.3646 -3.1469 4.6264 31 1 0.0334 -2.8393 3.3876 32 1 0.8668 -7.8541 3.0871 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260581325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:11 Heat of formation + Delta-G solvation = -77.532656 kcal Electronic energy + Delta-G solvation = -14246.802128 eV Core-core repulsion = 11787.001289 eV Total energy + Delta-G solvation = -2459.800840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.29279 -37.08668 -35.22585 -33.70755 -32.18726 -27.31535 -27.25163 -26.02367 -24.17586 -20.93605 -20.09424 -18.85666 -17.11500 -16.17094 -15.88806 -15.41003 -14.64621 -14.12093 -13.96629 -13.51598 -13.02015 -12.41543 -12.09364 -11.86801 -11.75286 -11.63375 -11.60196 -11.20005 -11.06203 -10.96937 -10.80352 -10.44634 -10.05886 -9.71513 -9.36538 -9.16267 -8.93111 -8.39709 -6.15709 -4.18001 2.88328 3.18303 3.28122 3.32447 3.35370 4.33645 4.85756 4.87144 4.94958 5.03944 5.27760 5.43837 5.52961 5.61234 5.75718 5.81995 5.96896 6.02088 6.04232 6.17588 6.24037 6.40830 6.49297 6.55061 6.74220 6.96741 7.09733 7.58858 7.82635 8.27316 8.54681 8.84583 9.43091 10.94405 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.062041 B = 0.006512 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.203516 B = 4298.430754 C = 4326.368204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.113 3.887 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.355 6.355 6 C 0.497 3.503 7 O -0.509 6.509 8 C -0.210 4.210 9 H 0.114 0.886 10 C -0.180 4.180 11 C 0.073 3.927 12 H 0.094 0.906 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.070 3.930 16 N -0.880 5.880 17 Si 0.902 3.098 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 12.423 -4.435 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.274 6.274 6 C 0.343 3.657 7 O -0.398 6.398 8 C -0.230 4.230 9 H 0.132 0.868 10 C -0.218 4.218 11 C 0.055 3.945 12 H 0.112 0.888 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.516 5.516 17 Si 0.729 3.271 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.465 12.113 -4.734 13.014 hybrid contribution 0.537 -0.411 0.284 0.734 sum 1.001 11.702 -4.450 12.559 Atomic orbital electron populations 1.22479 0.94457 1.04892 1.02068 1.22053 0.94223 0.92136 0.83969 1.21820 1.02034 0.93128 1.02548 1.22478 1.01541 1.03496 0.96425 1.86588 1.70347 1.26300 1.44126 1.23177 0.76383 0.79268 0.86905 1.90501 1.36101 1.69866 1.43295 1.22123 1.00694 1.03782 0.96384 0.86798 1.23108 0.94018 1.09136 0.95563 1.20142 0.95952 0.82598 0.95834 0.88838 1.20620 1.00811 0.92346 1.40363 0.91903 1.25052 0.95375 0.98248 0.94801 1.69966 1.19878 1.16619 1.45090 0.86505 0.80982 0.79825 0.79828 1.19923 1.21033 1.19929 0.92258 0.91594 0.89585 0.91673 0.90842 0.91696 0.89506 0.91622 0.92189 0.89027 0.90911 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.37 37.16 0.31 -2.28 16 2 C 0.11 1.66 1.13 -90.62 -0.10 1.56 16 3 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 4 C -0.18 -2.62 8.37 37.15 0.31 -2.31 16 5 O -0.36 -6.51 9.89 -39.27 -0.39 -6.89 16 6 C 0.50 10.48 7.05 36.00 0.25 10.74 16 7 O -0.51 -11.56 11.76 -18.75 -0.22 -11.78 16 8 C -0.21 -4.68 6.00 -91.77 -0.55 -5.23 16 9 H 0.11 2.40 8.14 -51.93 -0.42 1.97 16 10 C -0.18 -4.07 9.94 -26.69 -0.27 -4.34 16 11 C 0.07 1.91 5.09 -91.74 -0.47 1.45 16 12 H 0.09 2.71 7.43 -51.92 -0.39 2.33 16 13 C -0.50 -13.92 9.21 -34.44 -0.32 -14.24 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 16 N -0.88 -25.61 13.13 55.43 0.73 -24.88 16 17 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 1.47 5.89 -51.92 -0.31 1.16 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.50 5.89 -51.93 -0.31 1.20 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -29.44 271.86 -6.17 -35.61 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.77 Total: 2.03 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.60 Total: -14.04 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.73 Total: -24.88 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.61 Total: -18.68 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.44 -6.17 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260581325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.924 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds