Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09005 * 109.50176 * 304.91694 * 3 2 1 5 5 O 1.42885 * 109.50500 * 64.99616 * 3 2 1 6 6 C 1.42887 * 114.50035 * 184.87112 * 5 3 2 7 7 C 1.53364 * 109.27829 * 295.07207 * 6 5 3 8 8 C 1.51511 * 108.09540 * 52.25486 * 7 6 5 9 9 O 1.20760 * 121.21284 * 131.60465 * 8 7 6 10 10 C 1.51510 * 117.57213 * 311.58095 * 8 7 6 11 11 H 1.08993 * 109.73531 * 168.07083 * 10 8 7 12 12 C 1.53003 * 109.73682 * 288.77276 * 10 8 7 13 13 C 1.50701 * 109.46837 * 293.64019 * 12 10 8 14 14 H 1.08006 * 120.00143 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00117 * 180.02562 * 13 12 10 16 16 N 1.31514 * 119.99797 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00009 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47224 * 90.00330 * 17 15 13 19 19 H 1.48504 * 109.46956 * 209.99857 * 17 15 13 20 20 H 1.48494 * 109.47373 * 329.99662 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 26 26 H 1.08997 * 109.50201 * 55.00949 * 6 5 3 27 27 H 1.09003 * 109.50535 * 175.08994 * 6 5 3 28 28 H 1.09002 * 109.73521 * 171.90454 * 7 6 5 29 29 H 1.09000 * 109.73687 * 292.59889 * 7 6 5 30 30 H 1.09004 * 109.47371 * 53.63752 * 12 10 8 31 31 H 1.09000 * 109.47165 * 173.64408 * 12 10 8 32 32 H 0.97000 * 120.00069 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6068 1.9817 -0.8425 5 8 1.6623 2.0821 1.2206 6 6 1.9908 3.4711 1.2881 7 6 3.5158 3.6323 1.2679 8 6 4.0542 2.8667 0.0765 9 8 4.8417 3.3710 -0.6875 10 6 3.5689 1.4450 -0.1211 11 1 3.8605 1.0906 -1.1096 12 6 4.1736 0.5387 0.9530 13 6 5.6646 0.4483 0.7528 14 1 6.1338 0.9835 -0.0596 15 6 6.4295 -0.3184 1.6060 16 7 5.8582 -0.9704 2.5949 17 14 8.2775 -0.4310 1.3573 18 1 8.9471 0.6482 2.1267 19 1 8.7614 -1.7517 1.8334 20 1 8.5929 -0.2791 -0.0858 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.5587 3.9892 0.4320 27 1 1.5916 3.8951 2.2096 28 1 3.7731 4.6874 1.1743 29 1 3.9407 3.2293 2.1872 30 1 3.9640 0.9537 1.9389 31 1 3.7359 -0.4567 0.8772 32 1 6.3964 -1.5096 3.1954 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260645204.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = -125.966425 kcal Electronic energy + Delta-G solvation = -14789.606512 eV Core-core repulsion = 12327.705427 eV Total energy + Delta-G solvation = -2461.901085 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.32958 -38.95425 -35.93292 -34.73442 -33.13260 -31.64852 -28.75957 -25.38992 -25.08556 -24.12415 -21.76318 -19.71637 -18.63620 -17.50385 -17.26391 -16.68713 -16.45282 -15.88089 -15.61420 -15.02459 -14.60628 -14.36405 -14.13427 -13.51494 -13.40401 -13.00942 -12.97631 -12.84799 -12.47896 -12.41614 -12.06069 -11.78938 -11.67123 -11.44905 -11.11310 -10.65306 -10.47918 -10.20384 -8.24670 -6.34756 1.00948 1.33924 1.34361 1.45931 2.35875 2.80684 3.08000 3.16525 3.75135 3.83109 4.07356 4.11748 4.23359 4.34596 4.44091 4.61033 4.67557 4.76216 4.85737 4.97136 5.01061 5.08057 5.19997 5.33696 5.45232 5.52349 5.62217 5.78600 6.16084 6.31749 6.52384 6.80023 7.33929 8.85550 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.030545 B = 0.010709 C = 0.009038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.461998 B = 2613.881761 C = 3097.401310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.109 3.891 4 H 0.077 0.923 5 O -0.382 6.382 6 C 0.071 3.929 7 C -0.202 4.202 8 C 0.374 3.626 9 O -0.504 6.504 10 C -0.162 4.162 11 H 0.077 0.923 12 C 0.055 3.945 13 C -0.549 4.549 14 H 0.041 0.959 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.273 1.273 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.008 0.992 31 H 0.022 0.978 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 5.921 -2.767 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.051 3.949 4 H 0.094 0.906 5 O -0.301 6.301 6 C -0.005 4.005 7 C -0.240 4.240 8 C 0.253 3.747 9 O -0.380 6.380 10 C -0.182 4.182 11 H 0.096 0.904 12 C 0.018 3.982 13 C -0.587 4.587 14 H 0.060 0.940 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.775 3.225 18 H -0.200 1.200 19 H -0.198 1.198 20 H -0.197 1.197 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.026 0.974 31 H 0.040 0.960 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.349 5.964 -2.874 12.285 hybrid contribution 1.626 -0.195 -0.102 1.640 sum -8.723 5.769 -2.976 10.873 Atomic orbital electron populations 1.21664 0.93288 1.02226 1.02382 1.21593 0.97763 0.93498 1.02739 1.22240 0.89969 0.95525 0.87189 0.90550 1.87894 1.80460 1.23403 1.38327 1.22770 0.90455 0.82330 1.04969 1.23027 1.00378 1.02317 0.98239 1.25200 0.76506 0.89246 0.83729 1.90286 1.29299 1.71980 1.46477 1.22749 0.98214 0.94929 1.02273 0.90439 1.18804 0.93379 0.93794 0.92236 1.21608 0.94500 1.29333 1.13303 0.94029 1.25731 1.02980 0.95004 0.94825 1.70046 1.37265 1.31323 1.17250 0.85677 0.80463 0.77874 0.78484 1.20025 1.19848 1.19739 0.91849 0.91633 0.92408 0.92488 0.90310 0.90850 0.85035 0.87060 0.88432 0.97360 0.96000 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.81 71.98 0.71 -2.57 16 2 C -0.12 -3.67 4.92 30.60 0.15 -3.52 16 3 C 0.11 3.54 2.34 30.72 0.07 3.61 16 4 H 0.08 2.10 8.13 -2.38 -0.02 2.08 16 5 O -0.38 -12.19 9.60 -148.98 -1.43 -13.62 16 6 C 0.07 1.80 6.85 72.10 0.49 2.29 16 7 C -0.20 -6.44 6.12 30.23 0.19 -6.26 16 8 C 0.37 15.47 5.58 29.62 0.17 15.63 16 9 O -0.50 -23.77 17.91 -1.45 -0.03 -23.80 16 10 C -0.16 -6.78 2.25 -11.16 -0.03 -6.80 16 11 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 12 C 0.05 2.82 3.91 29.85 0.12 2.93 16 13 C -0.55 -31.88 8.64 25.60 0.22 -31.66 16 14 H 0.04 2.49 7.66 -2.91 -0.02 2.46 16 15 C 0.01 0.80 5.46 84.65 0.46 1.26 16 16 N -0.92 -54.94 13.29 21.45 0.28 -54.65 16 17 Si 0.95 45.54 29.54 68.60 2.03 47.57 16 18 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.40 7.82 -2.38 -0.02 1.38 16 24 H 0.06 2.10 6.55 -2.39 -0.02 2.09 16 25 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 27 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.10 3.45 7.78 -2.39 -0.02 3.43 16 30 H 0.01 0.44 7.44 -2.39 -0.02 0.42 16 31 H 0.02 1.17 6.17 -2.39 -0.01 1.15 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -67.88 264.39 4.49 -63.39 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.09 Total: 6.18 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 2.55 Total: -25.07 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.28 Total: -54.65 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.46 Total: -37.42 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -67.88 4.49 -63.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260645204.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.575 kcal (2) G-P(sol) polarization free energy of solvation -67.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds