Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 H 1.09006 * 109.50177 * 305.08134 * 3 2 1 5 5 O 1.42893 * 109.53853 * 65.17551 * 3 2 1 6 6 C 1.42894 * 114.49923 * 184.89371 * 5 3 2 7 7 C 1.53357 * 109.27747 * 295.06772 * 6 5 3 8 8 C 1.51516 * 108.09768 * 52.25698 * 7 6 5 9 9 O 1.20760 * 121.21221 * 131.59755 * 8 7 6 10 10 C 1.51509 * 117.56939 * 311.58455 * 8 7 6 11 11 H 1.09002 * 109.73671 * 288.76371 * 10 8 7 12 12 C 1.53001 * 109.77376 * 168.08699 * 10 8 7 13 13 C 1.50698 * 109.47356 * 65.67949 * 12 10 8 14 14 H 1.07997 * 119.99787 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00120 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00158 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47291 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46502 * 120.00654 * 17 15 13 20 20 H 1.48493 * 109.47598 * 240.00264 * 17 15 13 21 21 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47128 * 300.00051 * 1 2 3 23 23 H 1.08997 * 109.47245 * 60.00175 * 1 2 3 24 24 H 1.08996 * 109.47570 * 239.99664 * 2 1 3 25 25 H 1.09007 * 109.47291 * 119.99919 * 2 1 3 26 26 H 1.08996 * 109.50125 * 55.00943 * 6 5 3 27 27 H 1.09004 * 109.49814 * 175.08848 * 6 5 3 28 28 H 1.08998 * 109.74052 * 171.90576 * 7 6 5 29 29 H 1.09006 * 109.73839 * 292.56072 * 7 6 5 30 30 H 1.09006 * 109.46775 * 185.67938 * 12 10 8 31 31 H 1.08996 * 109.47143 * 305.67342 * 12 10 8 32 32 H 0.96998 * 120.00263 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9824 -0.8409 5 8 1.6663 2.0815 1.2222 6 6 1.9949 3.4705 1.2892 7 6 3.5197 3.6319 1.2641 8 6 4.0544 2.8667 0.0706 9 8 4.8393 3.3715 -0.6958 10 6 3.5684 1.4452 -0.1260 11 1 4.0019 0.7991 0.6375 12 6 3.9733 0.9472 -1.5149 13 6 5.4750 0.8508 -1.5960 14 1 6.0801 1.1184 -0.7424 15 6 6.0764 0.4210 -2.7599 16 7 5.3395 0.0956 -3.7994 17 14 7.9379 0.3022 -2.8606 18 1 8.5315 0.7227 -1.5660 19 1 8.3292 -1.1004 -3.1519 20 1 8.4327 1.1893 -3.9438 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.5599 3.9890 0.4348 27 1 1.5986 3.8940 2.2122 28 1 3.7768 4.6869 1.1702 29 1 3.9477 3.2291 2.1822 30 1 3.5361 -0.0358 -1.6901 31 1 3.6126 1.6451 -2.2705 32 1 5.7626 -0.2064 -4.6184 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260645207.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = -102.610396 kcal Electronic energy + Delta-G solvation = -14691.291394 eV Core-core repulsion = 12230.403102 eV Total energy + Delta-G solvation = -2460.888292 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77180 -37.36430 -34.41937 -32.83182 -31.32585 -30.44263 -26.90155 -23.96838 -23.77035 -21.55300 -20.61268 -18.57043 -16.78432 -15.83529 -15.67602 -15.11346 -14.53416 -14.38575 -13.91187 -13.56433 -13.46405 -12.91463 -12.17150 -11.97476 -11.73750 -11.61044 -11.26598 -10.96931 -10.85774 -10.75659 -10.59531 -10.27542 -10.21710 -9.65528 -9.33548 -8.91024 -8.58026 -8.23301 -5.93366 -3.91631 2.71881 3.36472 3.43553 3.48770 3.96166 4.53332 4.59174 5.05297 5.11809 5.28601 5.36851 5.44669 5.48765 5.52731 5.71836 5.77393 5.92175 5.97027 6.07371 6.28020 6.31586 6.37682 6.47404 6.63021 6.80262 7.47629 7.59326 7.71209 8.02237 8.30721 8.44316 9.08628 9.69618 11.18657 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.010068 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.223317 B = 2780.469195 C = 3408.387269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.100 3.900 4 H 0.059 0.941 5 O -0.381 6.381 6 C 0.073 3.927 7 C -0.210 4.210 8 C 0.351 3.649 9 O -0.418 6.418 10 C -0.157 4.157 11 H 0.098 0.902 12 C 0.036 3.964 13 C -0.496 4.496 14 H 0.052 0.948 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.019 0.981 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 3.236 9.585 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.043 3.957 4 H 0.077 0.923 5 O -0.301 6.301 6 C -0.005 4.005 7 C -0.248 4.248 8 C 0.223 3.777 9 O -0.287 6.287 10 C -0.176 4.176 11 H 0.116 0.884 12 C -0.001 4.001 13 C -0.534 4.534 14 H 0.070 0.930 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.719 3.281 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.170 3.355 9.130 12.703 hybrid contribution 1.253 0.151 -0.251 1.287 sum -6.916 3.505 8.880 11.789 Atomic orbital electron populations 1.21723 0.95879 1.01133 1.01746 1.21608 0.95761 0.94235 1.03683 1.22327 0.93297 0.94334 0.85789 0.92343 1.87830 1.81481 1.21914 1.38828 1.22443 0.92547 0.83374 1.02108 1.23103 0.98612 1.02295 1.00769 1.24735 0.79265 0.89852 0.83844 1.90430 1.25686 1.69827 1.42781 1.22714 0.94836 0.95552 1.04504 0.88382 1.19056 0.97010 0.96394 0.87626 1.21055 0.91367 1.42544 0.98470 0.93009 1.24928 0.97974 0.95766 0.95795 1.69954 1.34837 1.46090 1.03105 0.86544 0.86168 0.77331 0.78010 1.19908 1.21176 1.21103 0.93027 0.92436 0.93085 0.89215 0.91265 0.93132 0.88559 0.89373 0.88342 0.95318 0.96247 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.81 37.16 0.36 -1.55 16 2 C -0.12 -1.79 5.55 -26.73 -0.15 -1.94 16 3 C 0.10 1.70 2.09 -26.54 -0.06 1.64 16 4 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 5 O -0.38 -5.85 9.87 -35.23 -0.35 -6.20 16 6 C 0.07 0.94 6.85 37.34 0.26 1.20 16 7 C -0.21 -3.05 6.40 -27.30 -0.17 -3.23 16 8 C 0.35 7.11 6.44 -28.24 -0.18 6.92 16 9 O -0.42 -10.30 15.76 6.00 0.09 -10.20 16 10 C -0.16 -3.20 2.05 -91.19 -0.19 -3.39 16 11 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 12 C 0.04 0.92 4.07 -27.88 -0.11 0.81 16 13 C -0.50 -14.33 7.66 -34.44 -0.26 -14.59 16 14 H 0.05 1.50 7.50 -52.49 -0.39 1.11 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 17 Si 0.89 22.68 29.54 -169.99 -5.02 17.66 16 18 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.72 7.83 -51.93 -0.41 0.32 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.09 1.51 6.43 -51.93 -0.33 1.18 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.75 6.44 -51.93 -0.33 0.41 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 264.06 15.07 3.98 3.98 Total: -1.00 -32.33 264.06 -5.99 -38.32 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.83 Total: -4.26 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.60 Total: -12.59 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.25 Total: -16.40 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.33 -5.99 -38.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260645207.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.290 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds