Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 H 1.09006 * 109.50177 * 305.08134 * 3 2 1 5 5 O 1.42893 * 109.53853 * 65.17551 * 3 2 1 6 6 C 1.42894 * 114.49923 * 184.89371 * 5 3 2 7 7 C 1.53357 * 109.27747 * 295.06772 * 6 5 3 8 8 C 1.51516 * 108.09768 * 52.25698 * 7 6 5 9 9 O 1.20760 * 121.21221 * 131.59755 * 8 7 6 10 10 C 1.51509 * 117.56939 * 311.58455 * 8 7 6 11 11 H 1.09002 * 109.73671 * 288.76371 * 10 8 7 12 12 C 1.53001 * 109.77376 * 168.08699 * 10 8 7 13 13 C 1.50698 * 109.47356 * 65.67949 * 12 10 8 14 14 H 1.07997 * 119.99787 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00120 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00158 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47291 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46502 * 120.00654 * 17 15 13 20 20 H 1.48493 * 109.47598 * 240.00264 * 17 15 13 21 21 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47128 * 300.00051 * 1 2 3 23 23 H 1.08997 * 109.47245 * 60.00175 * 1 2 3 24 24 H 1.08996 * 109.47570 * 239.99664 * 2 1 3 25 25 H 1.09007 * 109.47291 * 119.99919 * 2 1 3 26 26 H 1.08996 * 109.50125 * 55.00943 * 6 5 3 27 27 H 1.09004 * 109.49814 * 175.08848 * 6 5 3 28 28 H 1.08998 * 109.74052 * 171.90576 * 7 6 5 29 29 H 1.09006 * 109.73839 * 292.56072 * 7 6 5 30 30 H 1.09006 * 109.46775 * 185.67938 * 12 10 8 31 31 H 1.08996 * 109.47143 * 305.67342 * 12 10 8 32 32 H 0.96998 * 120.00263 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9824 -0.8409 5 8 1.6663 2.0815 1.2222 6 6 1.9949 3.4705 1.2892 7 6 3.5197 3.6319 1.2641 8 6 4.0544 2.8667 0.0706 9 8 4.8393 3.3715 -0.6958 10 6 3.5684 1.4452 -0.1260 11 1 4.0019 0.7991 0.6375 12 6 3.9733 0.9472 -1.5149 13 6 5.4750 0.8508 -1.5960 14 1 6.0801 1.1184 -0.7424 15 6 6.0764 0.4210 -2.7599 16 7 5.3395 0.0956 -3.7994 17 14 7.9379 0.3022 -2.8606 18 1 8.5315 0.7227 -1.5660 19 1 8.3292 -1.1004 -3.1519 20 1 8.4327 1.1893 -3.9438 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.5599 3.9890 0.4348 27 1 1.5986 3.8940 2.2122 28 1 3.7768 4.6869 1.1702 29 1 3.9477 3.2291 2.1822 30 1 3.5361 -0.0358 -1.6901 31 1 3.6126 1.6451 -2.2705 32 1 5.7626 -0.2064 -4.6184 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260645207.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -123.916767 kcal Electronic energy + Delta-G solvation = -14692.215307 eV Core-core repulsion = 12230.403102 eV Total energy + Delta-G solvation = -2461.812206 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26012 -38.87061 -36.02164 -34.63805 -32.98126 -31.79639 -28.74183 -25.48556 -25.24317 -23.23000 -21.97084 -20.11886 -18.72630 -17.39247 -17.06356 -16.69371 -16.47568 -15.90439 -15.38741 -14.99332 -14.66462 -14.35897 -14.10448 -13.45355 -13.38491 -13.08116 -12.88567 -12.73084 -12.55581 -12.26958 -12.00944 -11.95040 -11.72544 -11.37026 -11.19544 -10.61447 -10.50890 -10.09120 -8.19772 -6.24948 1.12291 1.33231 1.35286 1.47152 2.39077 2.75264 3.11418 3.18891 3.77772 3.85768 4.09514 4.10036 4.23905 4.36106 4.44862 4.62704 4.71201 4.76877 4.84292 4.91450 5.04863 5.09216 5.20174 5.27955 5.41626 5.50023 5.62112 5.78215 6.17715 6.26798 6.72678 6.84192 7.39808 8.92577 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.010068 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.223317 B = 2780.469195 C = 3408.387269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.112 3.888 4 H 0.050 0.950 5 O -0.377 6.377 6 C 0.068 3.932 7 C -0.195 4.195 8 C 0.345 3.655 9 O -0.475 6.475 10 C -0.159 4.159 11 H 0.102 0.898 12 C 0.044 3.956 13 C -0.510 4.510 14 H 0.044 0.956 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.283 1.283 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.142 0.858 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.017 0.983 31 H -0.018 1.018 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.068 3.689 11.604 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C 0.054 3.946 4 H 0.068 0.932 5 O -0.296 6.296 6 C -0.009 4.009 7 C -0.233 4.233 8 C 0.221 3.779 9 O -0.349 6.349 10 C -0.179 4.179 11 H 0.120 0.880 12 C 0.007 3.993 13 C -0.548 4.548 14 H 0.063 0.937 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.209 1.209 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.160 0.840 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.035 0.965 31 H 0.001 0.999 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.736 3.802 11.179 14.688 hybrid contribution 1.394 0.031 -0.858 1.637 sum -7.342 3.833 10.321 13.233 Atomic orbital electron populations 1.21670 0.93567 1.02360 1.02152 1.21583 0.97766 0.93068 1.02927 1.22086 0.90420 0.95526 0.86555 0.93193 1.87843 1.81044 1.23332 1.37339 1.22795 0.91242 0.82173 1.04672 1.23075 0.99607 1.02437 0.98167 1.25457 0.77767 0.89880 0.84818 1.90409 1.28300 1.70871 1.45277 1.22658 0.97777 0.96354 1.01073 0.87982 1.18831 0.95360 0.94965 0.90096 1.21387 0.93056 1.42051 0.98326 0.93740 1.25811 1.02907 0.95590 0.95565 1.70066 1.36791 1.46940 1.03655 0.85532 0.80378 0.77945 0.78007 1.19444 1.19632 1.20866 0.91466 0.91452 0.93175 0.91503 0.90510 0.92738 0.84030 0.87567 0.86044 0.96492 0.99919 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.81 71.98 0.71 -2.66 16 2 C -0.12 -3.51 5.55 30.59 0.17 -3.34 16 3 C 0.11 3.72 2.09 30.72 0.06 3.78 16 4 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 5 O -0.38 -10.40 9.87 -148.98 -1.47 -11.87 16 6 C 0.07 1.49 6.85 72.10 0.49 1.98 16 7 C -0.20 -5.10 6.40 30.23 0.19 -4.91 16 8 C 0.34 13.88 6.44 29.62 0.19 14.07 16 9 O -0.47 -23.98 15.76 -1.45 -0.02 -24.01 16 10 C -0.16 -6.57 2.05 -11.16 -0.02 -6.60 16 11 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 12 C 0.04 2.38 4.07 29.85 0.12 2.50 16 13 C -0.51 -30.36 7.66 25.60 0.20 -30.16 16 14 H 0.04 2.65 7.50 -2.91 -0.02 2.62 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 16 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 17 Si 0.96 47.20 29.54 68.60 2.03 49.22 16 18 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.07 1.50 7.83 -2.38 -0.02 1.48 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 2.31 6.43 -2.39 -0.02 2.30 16 25 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 27 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.02 0.93 6.44 -2.38 -0.02 0.91 16 31 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -71.99 264.06 4.48 -67.52 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.08 Total: 2.33 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 2.57 Total: -24.99 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.28 Total: -58.21 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.49 Total: -35.87 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -71.99 4.48 -67.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260645207.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.399 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds