Wall clock time and date at job start Mon Mar 30 2020 02:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50654 * 2 1 4 4 C 1.53362 * 109.50363 * 239.91922 * 2 1 3 5 5 C 1.51506 * 108.09512 * 187.76428 * 4 2 1 6 6 O 1.20769 * 121.21568 * 228.44168 * 5 4 2 7 7 C 1.51502 * 117.57320 * 48.42213 * 5 4 2 8 8 H 1.09003 * 109.74141 * 191.88376 * 7 5 4 9 9 C 1.53000 * 109.73974 * 71.22895 * 7 5 4 10 10 C 1.50703 * 109.46912 * 65.00245 * 9 7 5 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46999 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46942 * 119.99666 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99580 * 14 12 10 18 18 C 1.53359 * 108.09508 * 311.57996 * 7 5 4 19 19 H 1.08998 * 109.50603 * 292.31626 * 18 7 5 20 20 C 1.53004 * 109.50622 * 172.19585 * 18 7 5 21 21 O 1.42891 * 109.27903 * 52.25644 * 18 7 5 22 22 H 1.09002 * 109.47179 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47156 * 300.07836 * 1 2 3 24 24 H 1.09006 * 109.47100 * 60.07865 * 1 2 3 25 25 H 1.09003 * 109.73178 * 68.12032 * 4 2 1 26 26 H 1.08993 * 109.77650 * 307.44068 * 4 2 1 27 27 H 1.09002 * 109.47398 * 185.00322 * 9 7 5 28 28 H 1.09001 * 109.47194 * 305.00503 * 9 7 5 29 29 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 30 30 H 1.08998 * 109.47176 * 60.00190 * 20 18 7 31 31 H 1.09000 * 109.47616 * 180.02562 * 20 18 7 32 32 H 1.09001 * 109.47089 * 299.99861 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2509 5 6 3.5442 -0.8765 -1.1250 6 8 4.2819 -0.5772 -2.0332 7 6 4.0873 -1.4170 0.1820 8 1 5.1678 -1.2781 0.2172 9 6 3.7535 -2.9052 0.3042 10 6 4.4772 -3.6723 -0.7723 11 1 5.1121 -3.1507 -1.4732 12 6 4.3289 -5.0401 -0.8624 13 7 3.5562 -5.6754 -0.0086 14 14 5.2266 -5.9911 -2.1963 15 1 6.0263 -5.0507 -3.0217 16 1 6.1285 -6.9907 -1.5698 17 1 4.2380 -6.6878 -3.0581 18 6 3.4269 -0.6423 1.3289 19 1 3.7708 0.3919 1.3150 20 6 3.8020 -1.2882 2.6643 21 8 2.0078 -0.6754 1.1651 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5150 0.8892 24 1 -0.3634 0.5126 -0.8907 25 1 1.8045 -0.1385 -2.1388 26 1 1.5774 -1.7078 -1.3237 27 1 4.0671 -3.2688 1.2828 28 1 2.6787 -3.0470 0.1912 29 1 3.4515 -6.6377 -0.0722 30 1 4.8848 -1.2658 2.7873 31 1 3.3321 -0.7375 3.4791 32 1 3.4561 -2.3217 2.6779 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260702108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:25 Heat of formation + Delta-G solvation = -123.955530 kcal Electronic energy + Delta-G solvation = -14836.639356 eV Core-core repulsion = 12374.825469 eV Total energy + Delta-G solvation = -2461.813886 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38046 -38.96168 -36.07380 -34.57934 -33.28127 -30.37133 -29.39585 -27.27410 -24.55163 -22.85452 -22.52372 -19.82665 -18.65454 -17.60464 -17.15005 -16.73088 -16.39322 -16.11808 -15.52006 -14.73982 -14.44311 -14.07447 -13.75704 -13.54082 -13.25861 -12.98625 -12.92335 -12.86342 -12.73027 -12.65341 -12.40699 -12.10220 -11.66150 -11.39750 -11.17581 -10.65852 -10.45636 -10.24813 -8.24897 -6.34908 0.99534 1.32728 1.34317 1.47240 2.35826 2.69499 3.07772 3.15086 3.71686 3.79381 4.01266 4.08683 4.14722 4.41688 4.43208 4.59830 4.66615 4.77368 4.90461 4.94799 5.04815 5.07069 5.11303 5.30374 5.37161 5.46322 5.63010 5.78435 6.16092 6.34179 6.51292 6.80117 7.33863 8.85542 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.010212 C = 0.009551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.222395 B = 2741.097592 C = 2930.890384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.093 3.907 3 H 0.079 0.921 4 C -0.195 4.195 5 C 0.375 3.625 6 O -0.503 6.503 7 C -0.162 4.162 8 H 0.080 0.920 9 C 0.054 3.946 10 C -0.548 4.548 11 H 0.041 0.959 12 C 0.014 3.986 13 N -0.919 5.919 14 Si 0.950 3.050 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.275 1.275 18 C 0.102 3.898 19 H 0.078 0.922 20 C -0.141 4.141 21 O -0.383 6.383 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.023 0.977 28 H 0.007 0.993 29 H 0.266 0.734 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 11.244 2.790 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.233 4.233 5 C 0.254 3.746 6 O -0.379 6.379 7 C -0.182 4.182 8 H 0.098 0.902 9 C 0.017 3.983 10 C -0.586 4.586 11 H 0.060 0.940 12 C -0.186 4.186 13 N -0.559 5.559 14 Si 0.776 3.224 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.200 1.200 18 C 0.045 3.955 19 H 0.096 0.904 20 C -0.198 4.198 21 O -0.302 6.302 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.129 0.871 26 H 0.115 0.885 27 H 0.042 0.958 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.839 11.140 2.501 12.400 hybrid contribution 0.797 -0.961 -0.986 1.591 sum -4.042 10.178 1.515 11.056 Atomic orbital electron populations 1.21784 0.90352 1.03181 1.04135 1.22271 0.97160 0.94687 0.82384 0.90299 1.23069 0.93324 1.04469 1.02424 1.25184 0.92262 0.69528 0.87617 1.90288 1.63799 1.41452 1.42398 1.22745 1.01070 0.99616 0.94722 0.90189 1.18821 0.95827 0.87242 0.96399 1.21629 1.28601 0.93155 1.15252 0.94020 1.25736 0.96000 0.98712 0.98122 1.70054 1.39013 1.09252 1.37581 0.85618 0.78806 0.78604 0.79408 1.20045 1.19621 1.19998 1.22206 0.80592 0.98123 0.94622 0.90436 1.21798 1.02165 1.01313 0.94527 1.87905 1.21382 1.77258 1.43678 0.92632 0.90306 0.88647 0.87141 0.88525 0.95845 0.97450 0.92535 0.90128 0.89869 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.57 71.98 0.69 -2.20 16 2 C 0.09 2.54 3.26 30.72 0.10 2.64 16 3 H 0.08 1.82 8.13 -2.39 -0.02 1.80 16 4 C -0.20 -6.49 5.42 30.23 0.16 -6.32 16 5 C 0.38 15.73 5.51 29.61 0.16 15.89 16 6 O -0.50 -23.91 17.91 -1.48 -0.03 -23.93 16 7 C -0.16 -6.81 2.27 -11.16 -0.03 -6.84 16 8 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 9 C 0.05 2.79 3.88 29.85 0.12 2.90 16 10 C -0.55 -31.87 8.61 25.60 0.22 -31.65 16 11 H 0.04 2.50 7.61 -2.91 -0.02 2.48 16 12 C 0.01 0.78 5.46 84.65 0.46 1.24 16 13 N -0.92 -54.95 13.29 21.45 0.28 -54.67 16 14 Si 0.95 45.59 29.54 68.60 2.03 47.62 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 18 C 0.10 3.37 2.96 30.72 0.09 3.47 16 19 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 20 C -0.14 -4.29 9.01 71.98 0.65 -3.64 16 21 O -0.38 -12.68 9.68 -148.98 -1.44 -14.13 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 26 H 0.10 3.56 7.82 -2.39 -0.02 3.54 16 27 H 0.02 1.25 6.14 -2.39 -0.01 1.24 16 28 H 0.01 0.40 7.46 -2.39 -0.02 0.38 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.88 6.28 -2.39 -0.01 1.87 16 Total: -1.00 -67.98 264.58 4.56 -63.42 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.09 Total: 6.20 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 2.63 Total: -24.51 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.67 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.47 Total: -38.06 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -67.98 4.56 -63.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260702108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.531 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds