Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.50533 * 2 1 4 4 C 1.53367 * 109.50125 * 239.92943 * 2 1 3 5 5 C 1.51505 * 108.09723 * 187.76537 * 4 2 1 6 6 O 1.20764 * 121.21799 * 228.44099 * 5 4 2 7 7 C 1.51514 * 117.57212 * 48.41115 * 5 4 2 8 8 H 1.09002 * 109.73503 * 71.23556 * 7 5 4 9 9 C 1.53001 * 109.73905 * 191.88935 * 7 5 4 10 10 C 1.50705 * 109.47038 * 294.34744 * 9 7 5 11 11 H 1.08004 * 120.00037 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00195 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00045 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00248 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46594 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47088 * 119.99685 * 14 12 10 17 17 H 1.48497 * 109.47111 * 239.99692 * 14 12 10 18 18 C 1.53361 * 108.09458 * 311.58488 * 7 5 4 19 19 H 1.08994 * 109.50645 * 292.31357 * 18 7 5 20 20 C 1.53006 * 109.50179 * 172.19432 * 18 7 5 21 21 O 1.42879 * 109.53746 * 120.10471 * 2 1 3 22 22 H 1.08994 * 109.47051 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46830 * 300.07585 * 1 2 3 24 24 H 1.09001 * 109.47078 * 60.07392 * 1 2 3 25 25 H 1.08997 * 109.73729 * 68.10941 * 4 2 1 26 26 H 1.09007 * 109.77168 * 307.43286 * 4 2 1 27 27 H 1.08997 * 109.47374 * 54.34228 * 9 7 5 28 28 H 1.08994 * 109.47419 * 174.34785 * 9 7 5 29 29 H 0.97003 * 120.00329 * 179.97438 * 13 12 10 30 30 H 1.09005 * 109.46801 * 59.99789 * 20 18 7 31 31 H 1.09000 * 109.47043 * 179.97438 * 20 18 7 32 32 H 1.09001 * 109.47219 * 300.00229 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7244 -1.2511 5 6 3.5441 -0.8764 -1.1253 6 8 4.2818 -0.5770 -2.0334 7 6 4.0873 -1.4170 0.1817 8 1 3.8495 -2.4772 0.2687 9 6 5.6040 -1.2220 0.2311 10 6 6.2543 -2.0694 -0.8321 11 1 5.6466 -2.6856 -1.4781 12 6 7.6250 -2.0586 -0.9794 13 7 8.3652 -1.3086 -0.1925 14 14 8.4312 -3.1095 -2.2968 15 1 7.3862 -3.8556 -3.0428 16 1 9.1821 -2.2371 -3.2351 17 1 9.3659 -4.0713 -1.6595 18 6 3.4269 -0.6423 1.3288 19 1 3.7708 0.3919 1.3149 20 6 3.8021 -1.2883 2.6640 21 8 2.0078 -0.6754 1.1649 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5150 0.8893 24 1 -0.3633 0.5127 -0.8907 25 1 1.8043 -0.1384 -2.1389 26 1 1.5773 -1.7078 -1.3239 27 1 5.8414 -0.1729 0.0551 28 1 5.9769 -1.5195 1.2111 29 1 9.3296 -1.3013 -0.2959 30 1 4.8850 -1.2660 2.7869 31 1 3.3329 -0.7371 3.4789 32 1 3.4562 -2.3219 2.6775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260702110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -122.366103 kcal Electronic energy + Delta-G solvation = -14681.166923 eV Core-core repulsion = 12219.421960 eV Total energy + Delta-G solvation = -2461.744964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31572 -38.90404 -36.11267 -34.50358 -33.19349 -30.38502 -29.63623 -27.09490 -24.23228 -22.83938 -22.38489 -20.25935 -18.74222 -17.48335 -16.93958 -16.83636 -16.29311 -16.11780 -15.46338 -14.62706 -14.36287 -14.13209 -13.82263 -13.46226 -13.22443 -12.96149 -12.94336 -12.88660 -12.75528 -12.55087 -12.30079 -11.94424 -11.87743 -11.42887 -11.23416 -10.62183 -10.49816 -10.13021 -8.20008 -6.25267 1.10002 1.33494 1.35507 1.47426 2.39095 2.63827 3.10538 3.17624 3.71596 3.84419 4.00748 4.09462 4.12917 4.44398 4.45584 4.60645 4.66123 4.78769 4.83591 4.99059 5.05825 5.06787 5.12393 5.27119 5.36745 5.43830 5.61038 5.77904 6.18523 6.27783 6.70815 6.83849 7.39630 8.92457 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.044154 B = 0.009067 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.990198 B = 3087.483214 C = 3524.615165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.060 0.940 4 C -0.189 4.189 5 C 0.346 3.654 6 O -0.473 6.473 7 C -0.158 4.158 8 H 0.103 0.897 9 C 0.044 3.956 10 C -0.511 4.511 11 H 0.044 0.956 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.956 3.044 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.106 3.894 19 H 0.051 0.949 20 C -0.136 4.136 21 O -0.377 6.377 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.121 0.879 27 H -0.017 1.017 28 H 0.018 0.982 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 1.298 2.721 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.030 3.970 3 H 0.078 0.922 4 C -0.227 4.227 5 C 0.222 3.778 6 O -0.347 6.347 7 C -0.178 4.178 8 H 0.121 0.879 9 C 0.007 3.993 10 C -0.549 4.549 11 H 0.063 0.937 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.782 3.218 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.196 1.196 18 C 0.048 3.952 19 H 0.069 0.931 20 C -0.193 4.193 21 O -0.297 6.297 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.124 0.876 26 H 0.139 0.861 27 H 0.002 0.998 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.252 1.410 2.402 15.504 hybrid contribution 1.250 -0.286 -0.936 1.588 sum -14.001 1.124 1.466 14.123 Atomic orbital electron populations 1.21767 0.89545 1.03903 1.03893 1.22285 0.97417 0.94490 0.82811 0.92242 1.23119 0.92415 1.05367 1.01772 1.25436 0.92156 0.72409 0.87843 1.90409 1.63815 1.38531 1.41902 1.22667 0.98249 1.01919 0.94927 0.87931 1.18833 0.89110 0.94922 0.96411 1.21400 0.91993 1.24949 1.16585 0.93725 1.25811 0.98262 0.97300 0.98468 1.70068 1.05535 1.41499 1.40428 0.85527 0.78417 0.78706 0.79182 1.19458 1.20840 1.19583 1.22050 0.80196 0.97935 0.95031 0.93085 1.21750 1.01685 1.01688 0.94201 1.87849 1.20843 1.76952 1.44035 0.91074 0.90862 0.88959 0.87561 0.86149 0.99843 0.96344 0.92915 0.91596 0.90000 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.57 71.98 0.69 -1.49 16 2 C 0.09 2.14 3.26 30.72 0.10 2.24 16 3 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 4 C -0.19 -5.21 5.68 30.23 0.17 -5.03 16 5 C 0.35 14.11 6.44 29.62 0.19 14.30 16 6 O -0.47 -24.01 15.76 -1.46 -0.02 -24.04 16 7 C -0.16 -6.58 2.05 -11.16 -0.02 -6.60 16 8 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 9 C 0.04 2.37 4.07 29.85 0.12 2.49 16 10 C -0.51 -30.46 7.66 25.60 0.20 -30.26 16 11 H 0.04 2.66 7.50 -2.91 -0.02 2.63 16 12 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 13 N -0.93 -58.55 13.29 21.45 0.28 -58.26 16 14 Si 0.96 47.16 29.54 68.60 2.03 49.19 16 15 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 16 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 18 C 0.11 3.56 2.72 30.72 0.08 3.64 16 19 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 20 C -0.14 -4.05 9.38 71.98 0.68 -3.37 16 21 O -0.38 -10.94 9.97 -148.98 -1.48 -12.42 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 27 H -0.02 -1.01 8.13 -2.39 -0.02 -1.03 16 28 H 0.02 1.00 6.54 -2.39 -0.02 0.99 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.07 2.18 6.63 -2.38 -0.02 2.16 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -71.72 264.66 4.55 -67.16 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.08 Total: 2.10 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 2.67 Total: -23.73 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.28 Total: -58.26 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.51 Total: -36.46 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -71.72 4.55 -67.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260702110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.203 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds