Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.53512 * 2 1 4 4 O 1.42892 * 109.50330 * 239.90038 * 2 1 3 5 5 C 1.42885 * 114.49800 * 175.12846 * 4 2 1 6 6 C 1.53362 * 109.27960 * 64.93147 * 5 4 2 7 7 C 1.51514 * 108.09482 * 307.74516 * 6 5 4 8 8 O 1.20763 * 121.20922 * 228.44141 * 7 6 5 9 9 C 1.51506 * 117.57178 * 48.41260 * 7 6 5 10 10 H 1.09001 * 109.73419 * 191.88366 * 9 7 6 11 11 C 1.53006 * 109.73282 * 71.23497 * 9 7 6 12 12 C 1.50698 * 109.47184 * 65.00229 * 11 9 7 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99809 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99912 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47123 * 90.00333 * 16 14 12 18 18 H 1.48506 * 109.46940 * 210.00455 * 16 14 12 19 19 H 1.48493 * 109.47121 * 329.99876 * 16 14 12 20 20 H 1.09000 * 109.47327 * 299.90185 * 1 2 3 21 21 H 1.09005 * 109.47215 * 59.90244 * 1 2 3 22 22 H 1.09005 * 109.47471 * 179.90222 * 1 2 3 23 23 H 1.09000 * 109.46927 * 180.09885 * 3 2 1 24 24 H 1.09002 * 109.47243 * 300.09956 * 3 2 1 25 25 H 1.08999 * 109.47266 * 60.09687 * 3 2 1 26 26 H 1.09005 * 109.50562 * 304.98761 * 5 4 2 27 27 H 1.08997 * 109.53637 * 184.89238 * 5 4 2 28 28 H 1.09003 * 109.74019 * 188.09460 * 6 5 4 29 29 H 1.08997 * 109.77678 * 67.41470 * 6 5 4 30 30 H 1.09001 * 109.47002 * 184.99634 * 11 9 7 31 31 H 1.08993 * 109.46955 * 305.00071 * 11 9 7 32 32 H 0.97004 * 119.99097 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 8 2.0070 -0.6755 -1.1653 5 6 3.4260 -0.6431 -1.3297 6 6 4.0864 -1.4184 -0.1830 7 6 3.5440 -0.8777 1.1243 8 8 4.2821 -0.5790 2.0323 9 6 2.0420 -0.7249 1.2507 10 1 1.8050 -0.1397 2.1392 11 6 1.3890 -2.1050 1.3517 12 6 1.8271 -2.7758 2.6281 13 1 2.5039 -2.2687 3.2998 14 6 1.3647 -4.0372 2.9377 15 7 1.7475 -4.6228 4.0514 16 14 0.1947 -4.9145 1.7755 17 1 0.9754 -5.7118 0.7957 18 1 -0.6919 -5.8167 2.5535 19 1 -0.6297 -3.9124 1.0535 20 1 -0.3634 0.5123 0.8908 21 1 -0.3634 0.5154 -0.8891 22 1 -0.3634 -1.0277 -0.0018 23 1 3.1316 1.4407 -0.0018 24 1 1.6774 1.9567 -0.8891 25 1 1.6802 1.9557 0.8908 26 1 3.7706 0.3909 -1.3157 27 1 3.6933 -1.1029 -2.2811 28 1 5.1669 -1.2793 -0.2188 29 1 3.8487 -2.4786 -0.2697 30 1 0.3046 -1.9946 1.3530 31 1 1.6913 -2.7132 0.4993 32 1 1.4218 -5.5102 4.2694 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260736312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = -94.905531 kcal Electronic energy + Delta-G solvation = -15097.440514 eV Core-core repulsion = 12636.886330 eV Total energy + Delta-G solvation = -2460.554184 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.23086 -37.54123 -34.27393 -32.73528 -31.43679 -29.88591 -27.16625 -26.15590 -23.64417 -21.39044 -20.60030 -18.09880 -16.97538 -15.94472 -15.88918 -15.16979 -14.61367 -14.49867 -13.79274 -13.50497 -13.14977 -12.51416 -12.45799 -12.24404 -12.06097 -11.84822 -11.61547 -11.45821 -11.28038 -11.06372 -10.43572 -10.18330 -10.10651 -9.82536 -9.28349 -9.09330 -8.70180 -8.52865 -6.05886 -4.05729 2.65192 3.29103 3.36869 3.39666 3.90818 4.42318 4.60227 4.98036 5.01678 5.16796 5.23546 5.27978 5.34723 5.45196 5.65138 5.79884 5.87827 5.94255 6.04279 6.13942 6.18189 6.23286 6.37174 6.48869 6.62327 7.13962 7.23548 7.47923 7.71762 8.15314 8.49585 9.01371 9.54609 11.07298 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.012108 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.788197 B = 2311.968845 C = 2599.876077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.116 3.884 3 C -0.181 4.181 4 O -0.367 6.367 5 C 0.067 3.933 6 C -0.208 4.208 7 C 0.383 3.617 8 O -0.462 6.462 9 C -0.141 4.141 10 H 0.094 0.906 11 C 0.003 3.997 12 C -0.530 4.530 13 H 0.075 0.925 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.263 1.263 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.034 0.966 31 H 0.023 0.977 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 8.949 -11.710 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.077 3.923 3 C -0.238 4.238 4 O -0.286 6.286 5 C -0.010 4.010 6 C -0.246 4.246 7 C 0.258 3.742 8 O -0.335 6.335 9 C -0.160 4.160 10 H 0.112 0.888 11 C -0.034 4.034 12 C -0.568 4.568 13 H 0.093 0.907 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.187 1.187 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.307 8.860 -11.240 14.316 hybrid contribution -0.312 -0.629 -0.271 0.753 sum -0.618 8.231 -11.511 14.164 Atomic orbital electron populations 1.21809 0.91987 1.03821 1.01863 1.21655 0.95480 0.90224 0.84919 1.22494 1.01465 0.96963 1.02899 1.87921 1.20539 1.76362 1.43827 1.22533 0.81653 0.99037 0.97754 1.23011 1.01759 1.03877 0.95953 1.24533 0.91310 0.71500 0.86808 1.90335 1.62310 1.39666 1.41184 1.22561 0.93804 1.01582 0.98080 0.88751 1.19563 0.96314 0.89590 0.97927 1.21201 1.29416 1.01405 1.04784 0.90726 1.25003 0.95963 0.97146 0.95033 1.69932 1.44710 1.15124 1.23923 0.86826 0.81622 0.79976 0.81216 1.20197 1.21328 1.18734 0.90948 0.92331 0.90606 0.92496 0.91683 0.91113 0.92801 0.88321 0.89284 0.87161 0.94783 0.95906 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.30 37.16 0.31 -1.71 16 2 C 0.12 1.87 0.81 -90.44 -0.07 1.80 16 3 C -0.18 -2.41 7.97 37.16 0.30 -2.11 16 4 O -0.37 -5.92 9.90 -35.23 -0.35 -6.27 16 5 C 0.07 0.92 6.53 37.34 0.24 1.16 16 6 C -0.21 -3.41 6.13 -27.30 -0.17 -3.57 16 7 C 0.38 7.88 4.62 -28.24 -0.13 7.74 16 8 O -0.46 -10.97 17.91 6.00 0.11 -10.86 16 9 C -0.14 -2.83 1.73 -91.19 -0.16 -2.99 16 10 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 11 C 0.00 0.08 2.95 -27.88 -0.08 -0.01 16 12 C -0.53 -15.21 9.17 -34.44 -0.32 -15.52 16 13 H 0.07 2.40 7.86 -52.48 -0.41 1.98 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 16 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 20 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 1.23 6.28 -51.93 -0.33 0.90 16 23 H 0.06 0.77 5.75 -51.93 -0.30 0.47 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.65 6.12 -51.93 -0.32 0.33 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.11 1.89 7.82 -51.93 -0.41 1.48 16 30 H 0.03 0.78 5.20 -51.93 -0.27 0.51 16 31 H 0.02 0.53 6.88 -51.93 -0.36 0.17 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 254.87 15.07 3.84 3.84 Total: -1.00 -32.66 254.87 -4.99 -37.65 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.51 Total: -0.72 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.18 Total: -13.25 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.23 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.24 Total: -17.13 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.66 -4.99 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260736312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.258 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds