Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.53512 * 2 1 4 4 O 1.42892 * 109.50330 * 239.90038 * 2 1 3 5 5 C 1.42885 * 114.49800 * 175.12846 * 4 2 1 6 6 C 1.53362 * 109.27960 * 64.93147 * 5 4 2 7 7 C 1.51514 * 108.09482 * 307.74516 * 6 5 4 8 8 O 1.20763 * 121.20922 * 228.44141 * 7 6 5 9 9 C 1.51506 * 117.57178 * 48.41260 * 7 6 5 10 10 H 1.09001 * 109.73419 * 191.88366 * 9 7 6 11 11 C 1.53006 * 109.73282 * 71.23497 * 9 7 6 12 12 C 1.50698 * 109.47184 * 65.00229 * 11 9 7 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99809 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99912 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47123 * 90.00333 * 16 14 12 18 18 H 1.48506 * 109.46940 * 210.00455 * 16 14 12 19 19 H 1.48493 * 109.47121 * 329.99876 * 16 14 12 20 20 H 1.09000 * 109.47327 * 299.90185 * 1 2 3 21 21 H 1.09005 * 109.47215 * 59.90244 * 1 2 3 22 22 H 1.09005 * 109.47471 * 179.90222 * 1 2 3 23 23 H 1.09000 * 109.46927 * 180.09885 * 3 2 1 24 24 H 1.09002 * 109.47243 * 300.09956 * 3 2 1 25 25 H 1.08999 * 109.47266 * 60.09687 * 3 2 1 26 26 H 1.09005 * 109.50562 * 304.98761 * 5 4 2 27 27 H 1.08997 * 109.53637 * 184.89238 * 5 4 2 28 28 H 1.09003 * 109.74019 * 188.09460 * 6 5 4 29 29 H 1.08997 * 109.77678 * 67.41470 * 6 5 4 30 30 H 1.09001 * 109.47002 * 184.99634 * 11 9 7 31 31 H 1.08993 * 109.46955 * 305.00071 * 11 9 7 32 32 H 0.97004 * 119.99097 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 8 2.0070 -0.6755 -1.1653 5 6 3.4260 -0.6431 -1.3297 6 6 4.0864 -1.4184 -0.1830 7 6 3.5440 -0.8777 1.1243 8 8 4.2821 -0.5790 2.0323 9 6 2.0420 -0.7249 1.2507 10 1 1.8050 -0.1397 2.1392 11 6 1.3890 -2.1050 1.3517 12 6 1.8271 -2.7758 2.6281 13 1 2.5039 -2.2687 3.2998 14 6 1.3647 -4.0372 2.9377 15 7 1.7475 -4.6228 4.0514 16 14 0.1947 -4.9145 1.7755 17 1 0.9754 -5.7118 0.7957 18 1 -0.6919 -5.8167 2.5535 19 1 -0.6297 -3.9124 1.0535 20 1 -0.3634 0.5123 0.8908 21 1 -0.3634 0.5154 -0.8891 22 1 -0.3634 -1.0277 -0.0018 23 1 3.1316 1.4407 -0.0018 24 1 1.6774 1.9567 -0.8891 25 1 1.6802 1.9557 0.8908 26 1 3.7706 0.3909 -1.3157 27 1 3.6933 -1.1029 -2.2811 28 1 5.1669 -1.2793 -0.2188 29 1 3.8487 -2.4786 -0.2697 30 1 0.3046 -1.9946 1.3530 31 1 1.6913 -2.7132 0.4993 32 1 1.4218 -5.5102 4.2694 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260736312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = -117.863191 kcal Electronic energy + Delta-G solvation = -15098.436033 eV Core-core repulsion = 12636.886330 eV Total energy + Delta-G solvation = -2461.549703 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.65138 -39.08478 -35.89825 -34.53078 -33.03061 -31.42085 -28.29538 -27.92304 -25.03877 -23.25250 -21.95216 -19.50847 -19.06551 -17.35019 -17.32706 -16.63668 -16.41384 -15.99918 -15.39807 -15.06799 -14.62918 -14.32746 -13.91876 -13.64983 -13.32539 -13.17282 -12.94518 -12.89871 -12.71777 -12.54747 -12.12685 -11.88108 -11.71523 -11.60508 -11.11965 -10.80953 -10.48302 -10.27179 -8.32114 -6.38771 1.02041 1.35859 1.37593 1.50170 2.34005 2.75240 3.02663 3.14705 3.69595 3.75987 3.90129 4.07128 4.20717 4.24335 4.47723 4.55033 4.74759 4.78818 4.82476 4.88847 4.92878 4.99666 5.04571 5.21327 5.22341 5.32635 5.47112 5.60038 6.20951 6.30093 6.53480 6.70948 7.25871 8.85373 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.012108 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.788197 B = 2311.968845 C = 2599.876077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.121 3.879 3 C -0.177 4.177 4 O -0.375 6.375 5 C 0.067 3.933 6 C -0.205 4.205 7 C 0.372 3.628 8 O -0.508 6.508 9 C -0.147 4.147 10 H 0.074 0.926 11 C 0.012 3.988 12 C -0.540 4.540 13 H 0.018 0.982 14 C 0.005 3.995 15 N -0.952 5.952 16 Si 0.952 3.048 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.235 1.235 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.135 0.865 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 9.546 -15.070 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.082 3.918 3 C -0.234 4.234 4 O -0.294 6.294 5 C -0.009 4.009 6 C -0.243 4.243 7 C 0.251 3.749 8 O -0.385 6.385 9 C -0.166 4.166 10 H 0.092 0.908 11 C -0.025 4.025 12 C -0.578 4.578 13 H 0.036 0.964 14 C -0.191 4.191 15 N -0.592 5.592 16 Si 0.774 3.226 17 H -0.189 1.189 18 H -0.210 1.210 19 H -0.158 1.158 20 H 0.097 0.903 21 H 0.105 0.895 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.562 9.479 -14.626 17.499 hybrid contribution 0.166 -0.787 0.874 1.187 sum -1.397 8.693 -13.752 16.329 Atomic orbital electron populations 1.21848 0.90766 1.03277 1.03686 1.21647 0.96427 0.91052 0.82724 1.22459 1.01238 0.95187 1.04495 1.87919 1.21872 1.76540 1.43045 1.22814 0.80237 1.00137 0.97710 1.23073 1.03243 1.03484 0.94497 1.25250 0.91566 0.70262 0.87846 1.90312 1.63266 1.41852 1.43051 1.22568 0.93850 1.00082 1.00115 0.90803 1.19425 0.97079 0.91010 0.94962 1.21467 1.28415 1.01746 1.06162 0.96380 1.26081 0.98072 0.98035 0.96961 1.70110 1.46728 1.15871 1.26520 0.85634 0.79180 0.78988 0.78786 1.18946 1.20982 1.15818 0.90280 0.89452 0.92263 0.92872 0.88774 0.90851 0.90733 0.84691 0.87444 0.87882 0.93558 0.95214 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.30 71.98 0.60 -3.03 16 2 C 0.12 3.57 0.81 -10.68 -0.01 3.57 16 3 C -0.18 -4.17 7.97 71.98 0.57 -3.60 16 4 O -0.37 -10.66 9.90 -148.98 -1.47 -12.13 16 5 C 0.07 1.58 6.53 72.10 0.47 2.05 16 6 C -0.21 -6.38 6.13 30.23 0.19 -6.20 16 7 C 0.37 15.46 4.62 29.62 0.14 15.60 16 8 O -0.51 -25.23 17.91 -1.46 -0.03 -25.26 16 9 C -0.15 -5.88 1.73 -11.16 -0.02 -5.90 16 10 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 11 C 0.01 0.58 2.95 29.85 0.09 0.67 16 12 C -0.54 -32.11 9.17 25.60 0.23 -31.87 16 13 H 0.02 1.23 7.86 -2.91 -0.02 1.21 16 14 C 0.01 0.32 5.47 84.65 0.46 0.78 16 15 N -0.95 -61.46 13.96 21.45 0.30 -61.17 16 16 Si 0.95 43.95 27.47 68.60 1.88 45.83 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 20 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 22 H 0.06 1.74 6.28 -2.38 -0.01 1.72 16 23 H 0.05 1.29 5.75 -2.39 -0.01 1.28 16 24 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.48 6.12 -2.38 -0.01 1.47 16 27 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.10 3.39 7.82 -2.39 -0.02 3.37 16 30 H 0.05 2.05 5.20 -2.39 -0.01 2.03 16 31 H 0.03 1.34 6.88 -2.39 -0.02 1.32 16 32 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -74.45 254.87 4.45 -70.00 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.04 Total: 10.65 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 2.72 Total: -27.94 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.30 Total: -61.17 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.50 Total: -37.39 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Total: -74.45 4.45 -70.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260736312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.859 kcal (2) G-P(sol) polarization free energy of solvation -74.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds