Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47379 * 2 1 4 4 H 1.08997 * 109.50362 * 304.91916 * 3 2 1 5 5 C 1.53364 * 109.50488 * 184.80232 * 3 2 1 6 6 C 1.51511 * 108.09637 * 187.79739 * 5 3 2 7 7 O 1.20753 * 121.21696 * 228.68483 * 6 5 3 8 8 C 1.51516 * 117.56585 * 48.42141 * 6 5 3 9 9 H 1.09000 * 109.73993 * 71.22955 * 8 6 5 10 10 C 1.53000 * 109.73388 * 191.87914 * 8 6 5 11 11 C 1.50701 * 109.47545 * 295.00208 * 10 8 6 12 12 H 1.07998 * 119.99752 * 359.97438 * 11 10 8 13 13 C 1.37868 * 120.00043 * 180.02562 * 11 10 8 14 14 N 1.31520 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00193 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46901 * 59.99546 * 15 13 11 17 17 H 1.48494 * 109.47539 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47123 * 300.00240 * 15 13 11 19 19 C 1.53359 * 108.09753 * 311.57802 * 8 6 5 20 20 O 1.42885 * 109.50563 * 64.99746 * 3 2 1 21 21 H 1.08998 * 109.46810 * 300.00141 * 1 2 3 22 22 H 1.09001 * 109.46933 * 60.00048 * 1 2 3 23 23 H 1.08994 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47250 * 239.99516 * 2 1 3 25 25 H 1.08999 * 109.47177 * 120.00420 * 2 1 3 26 26 H 1.09008 * 109.73703 * 68.15195 * 5 3 2 27 27 H 1.08994 * 109.73795 * 307.45099 * 5 3 2 28 28 H 1.08999 * 109.47009 * 55.00342 * 10 8 6 29 29 H 1.08998 * 109.47049 * 174.99663 * 10 8 6 30 30 H 0.96999 * 120.00106 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.50614 * 172.19940 * 19 8 6 32 32 H 1.09002 * 109.50256 * 292.28129 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9816 -0.8425 5 6 3.5689 1.4450 -0.1210 6 6 4.0543 2.8666 0.0764 7 8 4.8378 3.3726 -0.6905 8 6 3.5159 3.6322 1.2679 9 1 3.9409 3.2291 2.1871 10 6 3.8783 5.1129 1.1372 11 6 5.3752 5.2720 1.2083 12 1 6.0050 4.4038 1.3346 13 6 5.9405 6.5259 1.1133 14 7 5.1734 7.5831 0.9599 15 14 7.7959 6.7232 1.2022 16 1 8.4284 5.9596 0.0966 17 1 8.1476 8.1602 1.0752 18 1 8.2868 6.2061 2.5048 19 6 1.9909 3.4710 1.2882 20 8 1.6624 2.0820 1.2206 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8605 1.0905 -1.1098 27 1 3.9998 0.7993 0.6441 28 1 3.5177 5.4922 0.1810 29 1 3.4143 5.6736 1.9486 30 1 5.5711 8.4653 0.8927 31 1 1.5923 3.8949 2.2099 32 1 1.5587 3.9898 0.4324 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260836640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = -104.282718 kcal Electronic energy + Delta-G solvation = -14445.810653 eV Core-core repulsion = 11984.849844 eV Total energy + Delta-G solvation = -2460.960809 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.75852 -37.42461 -34.37203 -33.15945 -31.46127 -30.28503 -26.95157 -24.31950 -23.41885 -21.57239 -20.99811 -18.50731 -16.74173 -15.94042 -15.77218 -15.10333 -14.58779 -14.41531 -13.90640 -13.68108 -13.63242 -12.95653 -12.19800 -12.12839 -11.84954 -11.54383 -11.25973 -11.13891 -11.05250 -10.78215 -10.70286 -10.44882 -10.26308 -9.65722 -9.38495 -8.95065 -8.58625 -8.24075 -5.92964 -3.91671 2.72269 3.39426 3.42794 3.47301 3.91053 4.53062 4.55612 4.82646 5.00944 5.12423 5.30345 5.40270 5.44786 5.49531 5.65097 5.70275 5.79292 5.88090 5.91589 5.99059 6.09148 6.25278 6.40285 6.40682 6.77430 7.44361 7.56817 7.70000 8.02072 8.31340 8.43951 9.08104 9.69614 11.19128 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.063784 B = 0.007399 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.877559 B = 3783.632075 C = 4045.736144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.098 3.902 4 H 0.059 0.941 5 C -0.203 4.203 6 C 0.352 3.648 7 O -0.417 6.417 8 C -0.163 4.163 9 H 0.098 0.902 10 C 0.036 3.964 11 C -0.498 4.498 12 H 0.051 0.949 13 C 0.056 3.944 14 N -0.901 5.901 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.071 3.929 20 O -0.380 6.380 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.020 0.980 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.101 0.899 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -13.190 -0.816 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.040 3.960 4 H 0.077 0.923 5 C -0.241 4.241 6 C 0.224 3.776 7 O -0.286 6.286 8 C -0.182 4.182 9 H 0.116 0.884 10 C -0.001 4.001 11 C -0.536 4.536 12 H 0.069 0.931 13 C -0.144 4.144 14 N -0.541 5.541 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.005 4.005 20 O -0.300 6.300 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.850 -12.812 -1.116 15.067 hybrid contribution 1.242 0.306 -0.132 1.286 sum -6.608 -12.506 -1.248 14.199 Atomic orbital electron populations 1.21718 0.95271 1.01287 1.02436 1.21557 0.96670 0.94284 1.02706 1.22067 0.91823 0.94301 0.87811 0.92258 1.23139 0.97994 0.98702 1.04291 1.24717 0.79348 0.88029 0.85544 1.90433 1.25734 1.70197 1.42270 1.22698 0.95288 1.01945 0.98263 0.88366 1.18984 0.97280 0.86183 0.97694 1.20970 0.91456 0.92454 1.48721 0.93072 1.24929 0.97916 0.96014 0.95562 1.69940 1.34862 0.98352 1.50935 0.86657 0.86053 0.76795 0.78508 1.20290 1.21343 1.20372 1.22781 0.94203 0.80878 1.02645 1.87825 1.81291 1.23588 1.37251 0.91745 0.92973 0.92943 0.90735 0.90947 0.89393 0.88320 0.96125 0.95681 0.93076 0.88072 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.08 16 2 C -0.11 -1.19 5.65 -26.73 -0.15 -1.35 16 3 C 0.10 1.32 2.64 -26.54 -0.07 1.25 16 4 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 5 C -0.20 -3.01 5.68 -27.30 -0.16 -3.16 16 6 C 0.35 7.12 6.43 -28.23 -0.18 6.94 16 7 O -0.42 -10.31 15.71 6.00 0.09 -10.21 16 8 C -0.16 -3.31 2.63 -91.18 -0.24 -3.55 16 9 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 10 C 0.04 0.92 4.19 -27.88 -0.12 0.80 16 11 C -0.50 -14.48 7.63 -34.44 -0.26 -14.74 16 12 H 0.05 1.48 7.46 -52.49 -0.39 1.09 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 15 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.07 1.19 6.16 37.34 0.23 1.42 16 20 O -0.38 -5.80 9.86 -35.23 -0.35 -6.15 16 21 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 LS Contribution 267.26 15.07 4.03 4.03 Total: -1.00 -32.52 267.26 -6.19 -38.72 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -5.00 Total: -5.21 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.68 Total: -11.91 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.74 Total: -26.96 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.25 Total: -16.36 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.52 -6.19 -38.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.564 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds