Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47379 * 2 1 4 4 H 1.08997 * 109.50362 * 304.91916 * 3 2 1 5 5 C 1.53364 * 109.50488 * 184.80232 * 3 2 1 6 6 C 1.51511 * 108.09637 * 187.79739 * 5 3 2 7 7 O 1.20753 * 121.21696 * 228.68483 * 6 5 3 8 8 C 1.51516 * 117.56585 * 48.42141 * 6 5 3 9 9 H 1.09000 * 109.73993 * 71.22955 * 8 6 5 10 10 C 1.53000 * 109.73388 * 191.87914 * 8 6 5 11 11 C 1.50701 * 109.47545 * 295.00208 * 10 8 6 12 12 H 1.07998 * 119.99752 * 359.97438 * 11 10 8 13 13 C 1.37868 * 120.00043 * 180.02562 * 11 10 8 14 14 N 1.31520 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00193 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46901 * 59.99546 * 15 13 11 17 17 H 1.48494 * 109.47539 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47123 * 300.00240 * 15 13 11 19 19 C 1.53359 * 108.09753 * 311.57802 * 8 6 5 20 20 O 1.42885 * 109.50563 * 64.99746 * 3 2 1 21 21 H 1.08998 * 109.46810 * 300.00141 * 1 2 3 22 22 H 1.09001 * 109.46933 * 60.00048 * 1 2 3 23 23 H 1.08994 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47250 * 239.99516 * 2 1 3 25 25 H 1.08999 * 109.47177 * 120.00420 * 2 1 3 26 26 H 1.09008 * 109.73703 * 68.15195 * 5 3 2 27 27 H 1.08994 * 109.73795 * 307.45099 * 5 3 2 28 28 H 1.08999 * 109.47009 * 55.00342 * 10 8 6 29 29 H 1.08998 * 109.47049 * 174.99663 * 10 8 6 30 30 H 0.96999 * 120.00106 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.50614 * 172.19940 * 19 8 6 32 32 H 1.09002 * 109.50256 * 292.28129 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9816 -0.8425 5 6 3.5689 1.4450 -0.1210 6 6 4.0543 2.8666 0.0764 7 8 4.8378 3.3726 -0.6905 8 6 3.5159 3.6322 1.2679 9 1 3.9409 3.2291 2.1871 10 6 3.8783 5.1129 1.1372 11 6 5.3752 5.2720 1.2083 12 1 6.0050 4.4038 1.3346 13 6 5.9405 6.5259 1.1133 14 7 5.1734 7.5831 0.9599 15 14 7.7959 6.7232 1.2022 16 1 8.4284 5.9596 0.0966 17 1 8.1476 8.1602 1.0752 18 1 8.2868 6.2061 2.5048 19 6 1.9909 3.4710 1.2882 20 8 1.6624 2.0820 1.2206 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8605 1.0905 -1.1098 27 1 3.9998 0.7993 0.6441 28 1 3.5177 5.4922 0.1810 29 1 3.4143 5.6736 1.9486 30 1 5.5711 8.4653 0.8927 31 1 1.5923 3.8949 2.2099 32 1 1.5587 3.9898 0.4324 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260836640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = -125.508001 kcal Electronic energy + Delta-G solvation = -14446.731050 eV Core-core repulsion = 11984.849844 eV Total energy + Delta-G solvation = -2461.881207 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22649 -38.89407 -35.93940 -34.73471 -33.28690 -31.47479 -28.80983 -25.61700 -25.02867 -23.31237 -22.02382 -20.06981 -18.66883 -17.43498 -17.18269 -16.72612 -16.41638 -15.90896 -15.44499 -14.99602 -14.62452 -14.25483 -14.07707 -13.54616 -13.39303 -13.12243 -12.93813 -12.59029 -12.55053 -12.35289 -12.08684 -11.84696 -11.71372 -11.45084 -11.22162 -10.62346 -10.53603 -10.12397 -8.19917 -6.25640 1.12074 1.34218 1.38661 1.45701 2.39646 2.73310 3.10533 3.17664 3.71286 3.84801 4.09138 4.13003 4.20744 4.32013 4.45862 4.60687 4.63098 4.75402 4.89323 4.91113 5.06106 5.07375 5.17865 5.31254 5.38610 5.52835 5.56818 5.76943 6.16032 6.25172 6.72478 6.83161 7.39414 8.92305 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.063784 B = 0.007399 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.877559 B = 3783.632075 C = 4045.736144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.092 3.908 4 H 0.059 0.941 5 C -0.189 4.189 6 C 0.348 3.652 7 O -0.474 6.474 8 C -0.164 4.164 9 H 0.105 0.895 10 C 0.041 3.959 11 C -0.513 4.513 12 H 0.046 0.954 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.957 3.043 16 H -0.279 1.279 17 H -0.279 1.279 18 H -0.263 1.263 19 C 0.083 3.917 20 O -0.376 6.376 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.121 0.879 28 H -0.013 1.013 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.116 0.884 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 -15.272 -0.570 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.034 3.966 4 H 0.077 0.923 5 C -0.226 4.226 6 C 0.224 3.776 7 O -0.347 6.347 8 C -0.184 4.184 9 H 0.123 0.877 10 C 0.004 3.996 11 C -0.551 4.551 12 H 0.064 0.936 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.782 3.218 16 H -0.205 1.205 17 H -0.204 1.204 18 H -0.187 1.187 19 C 0.007 3.993 20 O -0.295 6.295 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.123 0.877 27 H 0.139 0.861 28 H 0.005 0.995 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.005 -14.921 -0.848 16.954 hybrid contribution 1.237 0.931 -0.217 1.563 sum -6.768 -13.990 -1.065 15.578 Atomic orbital electron populations 1.21717 0.94723 1.02362 1.01894 1.21583 0.97087 0.91817 1.04129 1.22351 0.90783 0.96304 0.87119 0.92275 1.23099 0.98864 0.94568 1.06106 1.25370 0.77742 0.90307 0.84179 1.90414 1.28304 1.71953 1.44026 1.22636 0.98319 0.98291 0.99111 0.87668 1.18790 0.95660 0.89996 0.95169 1.21332 0.93108 0.92383 1.48252 0.93582 1.25828 1.02904 0.95823 0.95321 1.70059 1.36868 0.98804 1.51896 0.85624 0.80157 0.77112 0.78908 1.20521 1.20372 1.18724 1.22597 0.91193 0.82130 1.03425 1.87854 1.80925 1.22396 1.38329 0.93016 0.92845 0.91098 0.88518 0.90312 0.87651 0.86084 0.99483 0.97066 0.92900 0.86577 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.81 71.98 0.71 -1.70 16 2 C -0.11 -1.85 5.65 30.59 0.17 -1.68 16 3 C 0.09 2.23 2.64 30.72 0.08 2.31 16 4 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 5 C -0.19 -5.11 5.68 30.23 0.17 -4.94 16 6 C 0.35 13.99 6.43 29.62 0.19 14.18 16 7 O -0.47 -23.88 15.71 -1.43 -0.02 -23.90 16 8 C -0.16 -6.70 2.63 -11.16 -0.03 -6.73 16 9 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 10 C 0.04 2.19 4.19 29.85 0.13 2.32 16 11 C -0.51 -30.51 7.63 25.60 0.20 -30.31 16 12 H 0.05 2.72 7.46 -2.91 -0.02 2.70 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 14 N -0.93 -58.79 13.29 21.44 0.28 -58.51 16 15 Si 0.96 47.04 29.54 68.60 2.03 49.07 16 16 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 19 C 0.08 2.70 6.16 72.10 0.44 3.14 16 20 O -0.38 -10.59 9.86 -148.98 -1.47 -12.06 16 21 H 0.05 0.96 7.82 -2.39 -0.02 0.94 16 22 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 27 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 28 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 31 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 Total: -1.00 -71.62 267.26 4.42 -67.21 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.08 Total: 1.26 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 2.52 Total: -23.07 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.28 Total: -58.51 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.49 Total: -35.96 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -71.62 4.42 -67.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.302 kcal (2) G-P(sol) polarization free energy of solvation -71.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds