Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 H 1.08996 * 109.50567 * 55.08544 * 3 2 1 5 5 C 1.53360 * 109.53519 * 175.18294 * 3 2 1 6 6 C 1.51612 * 108.12127 * 172.21989 * 5 3 2 7 7 O 1.20767 * 121.27504 * 131.55659 * 6 5 3 8 8 C 1.51507 * 117.50886 * 311.60835 * 6 5 3 9 9 H 1.08997 * 109.73771 * 168.07299 * 8 6 5 10 10 C 1.52998 * 109.73632 * 288.72256 * 8 6 5 11 11 C 1.50706 * 109.47348 * 294.34566 * 10 8 6 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 8 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.53362 * 108.13853 * 48.39737 * 8 6 5 20 20 O 1.42889 * 109.27288 * 307.71895 * 19 8 6 21 21 H 1.08997 * 109.46723 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46321 * 299.99584 * 1 2 3 23 23 H 1.08991 * 109.47534 * 59.99845 * 1 2 3 24 24 H 1.09006 * 109.46824 * 240.00500 * 2 1 3 25 25 H 1.09000 * 109.47463 * 120.00446 * 2 1 3 26 26 H 1.08998 * 109.73848 * 291.86728 * 5 3 2 27 27 H 1.09000 * 109.74186 * 52.51745 * 5 3 2 28 28 H 1.09001 * 109.47671 * 174.34775 * 10 8 6 29 29 H 1.09006 * 109.47297 * 54.34495 * 10 8 6 30 30 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 31 31 H 1.08999 * 109.50193 * 67.65965 * 19 8 6 32 32 H 1.09001 * 109.50395 * 187.78236 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9816 0.8425 5 6 3.5688 1.4459 0.1214 6 6 4.0543 2.8686 -0.0758 7 8 4.8409 3.3742 0.6885 8 6 3.5148 3.6334 -1.2672 9 1 3.7716 4.6886 -1.1742 10 6 4.1120 3.0682 -2.5574 11 6 5.5967 3.3260 -2.5789 12 1 6.0672 3.8418 -1.7548 13 6 6.3544 2.9034 -3.6505 14 7 5.7814 2.2757 -4.6542 15 14 8.1945 3.2236 -3.6773 16 1 8.4597 4.5334 -4.3249 17 1 8.7136 3.2451 -2.2862 18 1 8.8732 2.1468 -4.4424 19 6 1.9899 3.4713 -1.2879 20 8 1.6624 2.0820 -1.2208 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8604 1.0914 1.1100 27 1 4.0003 0.7999 -0.6432 28 1 3.6468 3.5526 -3.4159 29 1 3.9290 1.9945 -2.6027 30 1 4.8258 2.1098 -4.6403 31 1 1.5573 3.9890 -0.4318 32 1 1.5914 3.8950 -2.2097 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260836643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = -112.755972 kcal Electronic energy + Delta-G solvation = -14646.120749 eV Core-core repulsion = 12184.792512 eV Total energy + Delta-G solvation = -2461.328237 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.86810 -37.49770 -34.53402 -33.42623 -31.52297 -30.11503 -26.67714 -24.29098 -23.33877 -22.16697 -21.02878 -18.38702 -16.75439 -16.38548 -16.05027 -14.86751 -14.69703 -14.35265 -13.79258 -13.68078 -13.55026 -13.05749 -12.59381 -12.08764 -12.00315 -11.60136 -11.43092 -11.06476 -11.01818 -10.99373 -10.58994 -10.48035 -10.10267 -9.86273 -9.35733 -8.81647 -8.52547 -8.32957 -6.38616 -4.09055 2.59318 3.44426 3.48360 3.64850 3.91312 4.51884 4.55118 4.87103 5.00465 5.12601 5.34327 5.37551 5.39684 5.45318 5.47685 5.67596 5.77974 5.86783 5.93757 6.08619 6.14461 6.21646 6.32627 6.39420 6.62998 7.26010 7.33840 7.46797 8.08449 8.13896 8.46074 8.85771 9.62732 11.01931 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.039558 B = 0.008755 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.654771 B = 3197.569070 C = 3369.836431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.057 0.943 5 C -0.200 4.200 6 C 0.384 3.616 7 O -0.467 6.467 8 C -0.159 4.159 9 H 0.091 0.909 10 C 0.030 3.970 11 C -0.610 4.610 12 H 0.052 0.948 13 C 0.019 3.981 14 N -0.910 5.910 15 Si 1.068 2.932 16 H -0.287 1.287 17 H -0.288 1.288 18 H -0.284 1.284 19 C 0.071 3.929 20 O -0.369 6.369 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.019 0.981 29 H 0.021 0.979 30 H 0.270 0.730 31 H 0.043 0.957 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 -2.717 8.339 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.041 3.959 4 H 0.074 0.926 5 C -0.238 4.238 6 C 0.260 3.740 7 O -0.340 6.340 8 C -0.178 4.178 9 H 0.109 0.891 10 C -0.007 4.007 11 C -0.648 4.648 12 H 0.070 0.930 13 C -0.185 4.185 14 N -0.546 5.546 15 Si 0.897 3.103 16 H -0.213 1.213 17 H -0.214 1.214 18 H -0.209 1.209 19 C -0.006 4.006 20 O -0.288 6.288 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.981 -2.772 7.703 11.434 hybrid contribution -1.147 0.422 1.040 1.604 sum -9.128 -2.350 8.743 12.856 Atomic orbital electron populations 1.21711 0.95282 1.01364 1.02225 1.21559 0.96581 0.94164 1.03043 1.22082 0.91769 0.94567 0.87464 0.92552 1.23047 0.97856 0.98253 1.04632 1.24614 0.77527 0.88762 0.83110 1.90314 1.27821 1.71437 1.44467 1.22661 0.95376 1.01566 0.98235 0.89099 1.19120 0.96263 0.96220 0.89142 1.22152 0.92856 1.41811 1.08029 0.93009 1.25806 1.06508 0.93769 0.92430 1.70764 1.13563 1.38503 1.31800 0.83550 0.74560 0.76616 0.75612 1.21337 1.21436 1.20921 1.22751 0.93912 0.81989 1.01918 1.87890 1.80837 1.22825 1.37220 0.92854 0.93160 0.91746 0.90567 0.90664 0.89397 0.87107 0.96276 0.96083 0.91987 0.93833 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.81 37.16 0.36 -1.21 16 2 C -0.12 -1.39 5.65 -26.73 -0.15 -1.55 16 3 C 0.10 1.45 2.64 -26.55 -0.07 1.38 16 4 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 5 C -0.20 -3.41 5.42 -27.25 -0.15 -3.55 16 6 C 0.38 8.05 5.55 -28.19 -0.16 7.90 16 7 O -0.47 -11.07 17.91 5.99 0.11 -10.96 16 8 C -0.16 -3.31 2.64 -91.19 -0.24 -3.55 16 9 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 10 C 0.03 0.74 3.62 -27.88 -0.10 0.64 16 11 C -0.61 -17.60 8.62 -34.44 -0.30 -17.90 16 12 H 0.05 1.54 7.64 -52.48 -0.40 1.14 16 13 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 14 N -0.91 -27.80 13.65 55.43 0.76 -27.04 16 15 Si 1.07 26.05 29.90 -169.99 -5.08 20.97 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 C 0.07 1.18 6.22 37.35 0.23 1.41 16 20 O -0.37 -6.20 9.59 -35.23 -0.34 -6.53 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.75 7.82 -51.93 -0.41 0.35 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.11 2.02 7.80 -51.93 -0.41 1.62 16 28 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 29 H 0.02 0.55 7.31 -51.93 -0.38 0.17 16 30 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 31 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -32.27 267.08 -6.10 -38.37 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.90 Total: -2.86 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.66 Total: -15.96 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.76 Total: -27.04 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.23 Total: -17.50 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.27 -6.10 -38.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.386 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds