Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 H 1.08996 * 109.50567 * 55.08544 * 3 2 1 5 5 C 1.53360 * 109.53519 * 175.18294 * 3 2 1 6 6 C 1.51612 * 108.12127 * 172.21989 * 5 3 2 7 7 O 1.20767 * 121.27504 * 131.55659 * 6 5 3 8 8 C 1.51507 * 117.50886 * 311.60835 * 6 5 3 9 9 H 1.08997 * 109.73771 * 168.07299 * 8 6 5 10 10 C 1.52998 * 109.73632 * 288.72256 * 8 6 5 11 11 C 1.50706 * 109.47348 * 294.34566 * 10 8 6 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 8 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.53362 * 108.13853 * 48.39737 * 8 6 5 20 20 O 1.42889 * 109.27288 * 307.71895 * 19 8 6 21 21 H 1.08997 * 109.46723 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46321 * 299.99584 * 1 2 3 23 23 H 1.08991 * 109.47534 * 59.99845 * 1 2 3 24 24 H 1.09006 * 109.46824 * 240.00500 * 2 1 3 25 25 H 1.09000 * 109.47463 * 120.00446 * 2 1 3 26 26 H 1.08998 * 109.73848 * 291.86728 * 5 3 2 27 27 H 1.09000 * 109.74186 * 52.51745 * 5 3 2 28 28 H 1.09001 * 109.47671 * 174.34775 * 10 8 6 29 29 H 1.09006 * 109.47297 * 54.34495 * 10 8 6 30 30 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 31 31 H 1.08999 * 109.50193 * 67.65965 * 19 8 6 32 32 H 1.09001 * 109.50395 * 187.78236 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9816 0.8425 5 6 3.5688 1.4459 0.1214 6 6 4.0543 2.8686 -0.0758 7 8 4.8409 3.3742 0.6885 8 6 3.5148 3.6334 -1.2672 9 1 3.7716 4.6886 -1.1742 10 6 4.1120 3.0682 -2.5574 11 6 5.5967 3.3260 -2.5789 12 1 6.0672 3.8418 -1.7548 13 6 6.3544 2.9034 -3.6505 14 7 5.7814 2.2757 -4.6542 15 14 8.1945 3.2236 -3.6773 16 1 8.4597 4.5334 -4.3249 17 1 8.7136 3.2451 -2.2862 18 1 8.8732 2.1468 -4.4424 19 6 1.9899 3.4713 -1.2879 20 8 1.6624 2.0820 -1.2208 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8604 1.0914 1.1100 27 1 4.0003 0.7999 -0.6432 28 1 3.6468 3.5526 -3.4159 29 1 3.9290 1.9945 -2.6027 30 1 4.8258 2.1098 -4.6403 31 1 1.5573 3.9890 -0.4318 32 1 1.5914 3.8950 -2.2097 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260836643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = -133.423400 kcal Electronic energy + Delta-G solvation = -14647.016956 eV Core-core repulsion = 12184.792512 eV Total energy + Delta-G solvation = -2462.224444 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.38377 -39.01811 -36.28144 -34.90142 -33.33724 -31.35225 -28.56042 -25.47658 -25.15848 -24.00154 -22.10544 -20.03517 -18.87888 -17.69469 -17.51717 -16.42797 -16.23109 -15.88242 -15.62534 -15.24089 -14.87509 -14.45418 -14.04566 -13.78965 -13.54241 -13.19435 -12.98176 -12.65154 -12.39861 -12.36795 -12.05459 -11.98094 -11.78873 -11.39010 -10.94795 -10.64722 -10.51306 -10.35185 -8.73309 -6.44594 0.91190 1.46545 1.54781 1.73931 2.49323 2.69404 3.03287 3.11124 3.62567 3.70704 3.94549 4.01437 4.14026 4.23215 4.36375 4.49491 4.54274 4.66550 4.75274 4.84544 4.86297 5.00241 5.13398 5.20043 5.25354 5.32360 5.48558 5.89998 6.12534 6.19549 6.42941 6.54174 7.34405 8.67726 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.039558 B = 0.008755 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.654771 B = 3197.569070 C = 3369.836431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.098 3.902 4 H 0.080 0.920 5 C -0.194 4.194 6 C 0.377 3.623 7 O -0.500 6.500 8 C -0.162 4.162 9 H 0.081 0.919 10 C 0.038 3.962 11 C -0.625 4.625 12 H 0.035 0.965 13 C -0.029 4.029 14 N -0.929 5.929 15 Si 1.111 2.889 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.276 1.276 19 C 0.078 3.922 20 O -0.381 6.381 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.260 0.740 31 H 0.076 0.924 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 -3.100 9.417 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.040 3.960 4 H 0.098 0.902 5 C -0.232 4.232 6 C 0.255 3.745 7 O -0.376 6.376 8 C -0.181 4.181 9 H 0.099 0.901 10 C 0.001 3.999 11 C -0.663 4.663 12 H 0.054 0.946 13 C -0.228 4.228 14 N -0.566 5.566 15 Si 0.933 3.067 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.201 1.201 19 C 0.002 3.998 20 O -0.300 6.300 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.737 -3.157 8.778 12.781 hybrid contribution -0.941 0.540 0.722 1.304 sum -9.679 -2.617 9.500 13.812 Atomic orbital electron populations 1.21686 0.93963 1.02423 1.02162 1.21605 0.97678 0.92279 1.03570 1.22353 0.89845 0.96400 0.87414 0.90227 1.23066 0.99800 0.94919 1.05409 1.25121 0.76518 0.90415 0.82411 1.90294 1.29082 1.72546 1.45719 1.22615 0.98664 1.00715 0.96155 0.90090 1.18919 0.94572 0.95349 0.91106 1.22462 0.94947 1.41431 1.07462 0.94615 1.27208 1.10554 0.93014 0.92020 1.70882 1.13116 1.39962 1.32641 0.82994 0.69939 0.77542 0.76195 1.19400 1.20724 1.20070 1.22740 0.90482 0.82637 1.03980 1.87898 1.80515 1.22867 1.38713 0.91311 0.91810 0.93194 0.91974 0.88265 0.87041 0.88643 0.97487 0.97426 0.93057 0.90549 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.81 71.98 0.71 -1.94 16 2 C -0.11 -2.44 5.65 30.60 0.17 -2.27 16 3 C 0.10 2.61 2.64 30.71 0.08 2.70 16 4 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 5 C -0.19 -6.36 5.42 30.26 0.16 -6.20 16 6 C 0.38 15.67 5.55 29.65 0.16 15.83 16 7 O -0.50 -23.76 17.91 -1.47 -0.03 -23.78 16 8 C -0.16 -6.74 2.64 -11.16 -0.03 -6.77 16 9 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 10 C 0.04 1.93 3.62 29.85 0.11 2.04 16 11 C -0.63 -36.71 8.62 25.60 0.22 -36.49 16 12 H 0.04 2.17 7.64 -2.91 -0.02 2.15 16 13 C -0.03 -1.72 5.46 84.65 0.46 -1.25 16 14 N -0.93 -57.40 13.65 21.45 0.29 -57.10 16 15 Si 1.11 52.31 29.90 68.60 2.05 54.36 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C 0.08 2.47 6.22 72.10 0.45 2.92 16 20 O -0.38 -12.14 9.59 -148.98 -1.43 -13.57 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 23 H 0.05 1.05 7.82 -2.39 -0.02 1.04 16 24 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.10 3.47 7.80 -2.39 -0.02 3.45 16 28 H 0.01 0.37 8.01 -2.39 -0.02 0.35 16 29 H 0.01 0.40 7.31 -2.38 -0.02 0.38 16 30 H 0.26 16.08 7.22 -92.71 -0.67 15.42 16 31 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 32 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -69.78 267.08 4.57 -65.22 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.18 Total: 6.31 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 2.50 Total: -31.42 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.29 Total: -57.10 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.45 Total: -37.36 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Total: -69.78 4.57 -65.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.208 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds