Wall clock time and date at job start Mon Mar 30 2020 02:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00078 * 2 1 4 4 H 1.48502 * 109.46880 * 239.99940 * 3 2 1 5 5 H 1.48494 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47356 * 120.00117 * 3 2 1 7 7 C 1.37877 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99950 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46779 * 299.99554 * 9 7 2 11 11 C 1.52996 * 109.47435 * 59.99977 * 9 7 2 12 12 N 1.46900 * 109.47250 * 184.37750 * 11 9 7 13 13 C 1.53004 * 109.47049 * 179.97438 * 9 7 2 14 14 N 1.46507 * 109.46963 * 65.14430 * 13 9 7 15 15 C 1.46757 * 124.34878 * 84.30329 * 14 13 9 16 16 C 1.54483 * 105.47263 * 197.01478 * 15 14 13 17 17 C 1.54633 * 101.76478 * 334.58458 * 16 15 14 18 18 C 1.34421 * 124.34846 * 263.99939 * 14 13 9 19 19 O 1.21284 * 124.94078 * 359.57460 * 18 14 13 20 20 H 0.97002 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47145 * 64.37455 * 11 9 7 22 22 H 1.09003 * 109.46664 * 304.37563 * 11 9 7 23 23 H 1.00900 * 111.00165 * 56.04179 * 12 11 9 24 24 H 1.00902 * 110.99747 * 179.97438 * 12 11 9 25 25 H 1.09001 * 109.47319 * 185.14042 * 13 9 7 26 26 H 1.08996 * 109.47054 * 305.14776 * 13 9 7 27 27 H 1.09004 * 110.24814 * 316.01078 * 15 14 13 28 28 H 1.09000 * 110.25060 * 77.92640 * 15 14 13 29 29 H 1.09001 * 110.97111 * 92.70135 * 16 15 14 30 30 H 1.08998 * 110.97325 * 216.46300 * 16 15 14 31 31 H 1.08998 * 110.48671 * 143.47458 * 17 16 15 32 32 H 1.08999 * 110.48437 * 265.99182 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 6 0.3718 -2.5805 -1.2490 12 7 -0.4408 -3.8033 -1.1973 13 6 2.2451 -3.6621 0.0005 14 7 3.0038 -3.6560 1.2539 15 6 2.5401 -4.2663 2.5054 16 6 3.4206 -3.6503 3.6153 17 6 4.6949 -3.2643 2.8289 18 6 4.2164 -3.0958 1.4037 19 8 4.8357 -2.5346 0.5248 20 1 -0.4850 0.8401 0.0004 21 1 1.0035 -2.6013 -2.1369 22 1 -0.2834 -1.7103 -1.2894 23 1 -0.9879 -3.8383 -0.3502 24 1 -1.0310 -3.8799 -2.0121 25 1 1.7033 -4.6034 -0.0915 26 1 2.9309 -3.5539 -0.8397 27 1 1.4915 -4.0236 2.6777 28 1 2.6758 -5.3473 2.4710 29 1 2.9457 -2.7685 4.0456 30 1 3.6464 -4.3857 4.3874 31 1 5.1090 -2.3301 3.2083 32 1 5.4361 -4.0613 2.8888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260930394.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:01 Heat of formation + Delta-G solvation = -41.914427 kcal Electronic energy + Delta-G solvation = -14787.683866 eV Core-core repulsion = 12361.720299 eV Total energy + Delta-G solvation = -2425.963566 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60375 -35.80983 -35.27291 -32.07574 -31.95278 -28.65521 -27.01505 -24.84746 -23.39983 -21.41906 -19.76364 -18.52805 -16.51311 -16.06351 -15.81118 -14.70420 -14.48912 -14.34433 -13.40861 -13.12570 -13.06945 -12.70103 -12.47815 -12.11404 -11.82071 -11.20132 -11.08264 -10.87670 -10.74004 -10.68605 -10.55092 -9.81441 -9.70734 -8.96634 -8.86763 -8.36737 -7.89359 -7.47578 -5.94225 -3.98119 3.38047 3.38554 3.40510 3.48601 3.91138 4.51388 4.86945 4.88746 5.15447 5.33485 5.50405 5.73189 5.80641 5.88707 6.04025 6.08001 6.31448 6.32309 6.54151 6.83194 6.83579 7.05405 7.36936 7.63049 7.79587 8.03272 8.09426 8.11141 8.32692 8.56547 9.00721 9.14676 9.66983 11.10319 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.013822 C = 0.010134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.219156 B = 2025.289788 C = 2762.258387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.041 3.959 10 H 0.024 0.976 11 C 0.058 3.942 12 N -0.861 5.861 13 C 0.139 3.861 14 N -0.600 5.600 15 C 0.105 3.895 16 C -0.131 4.131 17 C -0.156 4.156 18 C 0.517 3.483 19 O -0.536 6.536 20 H 0.257 0.743 21 H 0.043 0.957 22 H 0.068 0.932 23 H 0.328 0.672 24 H 0.319 0.681 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -8.199 5.970 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.543 4.543 8 H 0.090 0.910 9 C 0.022 3.978 10 H 0.042 0.958 11 C -0.072 4.072 12 N -0.387 5.387 13 C 0.018 3.982 14 N -0.333 5.333 15 C -0.019 4.019 16 C -0.168 4.168 17 C -0.197 4.197 18 C 0.303 3.697 19 O -0.413 6.413 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.139 0.861 24 H 0.129 0.871 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.888 -8.155 5.412 10.205 hybrid contribution -0.550 1.691 0.056 1.779 sum 2.338 -6.464 5.468 8.783 Atomic orbital electron populations 1.69865 1.05862 1.26277 1.52016 1.24966 0.94773 0.99091 0.95338 0.86673 0.79503 0.83088 0.78878 1.20238 1.21611 1.20405 1.21456 0.94107 0.89962 1.48749 0.91003 1.19021 0.92490 0.92501 0.93834 0.95813 1.22037 0.96334 0.89863 0.98979 1.59106 1.30199 1.43372 1.06059 1.21606 0.94029 0.99563 0.83004 1.48166 1.18457 1.55210 1.11429 1.21914 0.99508 0.96544 0.83908 1.22553 0.95411 1.01687 0.97197 1.22311 0.98703 1.03825 0.94853 1.20576 0.81546 0.77734 0.89796 1.90667 1.60288 1.42988 1.47371 0.93280 0.93868 0.91410 0.86118 0.87086 0.91785 0.91552 0.90604 0.92132 0.90083 0.90068 0.88783 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.30 55.43 0.63 -25.11 16 2 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 3 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.50 -14.20 8.13 -34.44 -0.28 -14.48 16 8 H 0.07 2.15 5.52 -52.49 -0.29 1.86 16 9 C 0.04 1.01 2.13 -91.77 -0.20 0.82 16 10 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 11 C 0.06 1.36 6.01 -3.83 -0.02 1.34 16 12 N -0.86 -16.26 8.97 -10.37 -0.09 -16.36 16 13 C 0.14 3.01 5.30 -4.04 -0.02 2.99 16 14 N -0.60 -11.85 2.76 -172.41 -0.48 -12.32 16 15 C 0.11 1.56 7.35 -3.12 -0.02 1.54 16 16 C -0.13 -1.65 7.18 -25.09 -0.18 -1.83 16 17 C -0.16 -2.32 6.86 -26.74 -0.18 -2.51 16 18 C 0.52 10.75 7.31 -10.86 -0.08 10.67 16 19 O -0.54 -13.52 15.94 5.55 0.09 -13.43 16 20 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 21 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.07 1.78 5.97 -51.93 -0.31 1.47 16 23 H 0.33 5.99 8.99 -39.29 -0.35 5.64 16 24 H 0.32 5.35 9.08 -39.29 -0.36 4.99 16 25 H 0.06 1.27 7.59 -51.93 -0.39 0.87 16 26 H 0.07 1.57 7.80 -51.93 -0.40 1.17 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 263.77 15.07 3.97 3.97 Total: -1.00 -31.85 263.77 -6.61 -38.45 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.63 Total: 7.12 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.08 Total: 0.09 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.06 Total: -53.79 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.85 -6.61 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260930394.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.462 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds