Wall clock time and date at job start Mon Mar 30 2020 02:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00078 * 2 1 4 4 H 1.48502 * 109.46880 * 239.99940 * 3 2 1 5 5 H 1.48494 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47356 * 120.00117 * 3 2 1 7 7 C 1.37877 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99950 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46779 * 299.99554 * 9 7 2 11 11 C 1.52996 * 109.47435 * 59.99977 * 9 7 2 12 12 N 1.46900 * 109.47250 * 184.37750 * 11 9 7 13 13 C 1.53004 * 109.47049 * 179.97438 * 9 7 2 14 14 N 1.46507 * 109.46963 * 65.14430 * 13 9 7 15 15 C 1.46757 * 124.34878 * 84.30329 * 14 13 9 16 16 C 1.54483 * 105.47263 * 197.01478 * 15 14 13 17 17 C 1.54633 * 101.76478 * 334.58458 * 16 15 14 18 18 C 1.34421 * 124.34846 * 263.99939 * 14 13 9 19 19 O 1.21284 * 124.94078 * 359.57460 * 18 14 13 20 20 H 0.97002 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47145 * 64.37455 * 11 9 7 22 22 H 1.09003 * 109.46664 * 304.37563 * 11 9 7 23 23 H 1.00900 * 111.00165 * 56.04179 * 12 11 9 24 24 H 1.00902 * 110.99747 * 179.97438 * 12 11 9 25 25 H 1.09001 * 109.47319 * 185.14042 * 13 9 7 26 26 H 1.08996 * 109.47054 * 305.14776 * 13 9 7 27 27 H 1.09004 * 110.24814 * 316.01078 * 15 14 13 28 28 H 1.09000 * 110.25060 * 77.92640 * 15 14 13 29 29 H 1.09001 * 110.97111 * 92.70135 * 16 15 14 30 30 H 1.08998 * 110.97325 * 216.46300 * 16 15 14 31 31 H 1.08998 * 110.48671 * 143.47458 * 17 16 15 32 32 H 1.08999 * 110.48437 * 265.99182 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 6 0.3718 -2.5805 -1.2490 12 7 -0.4408 -3.8033 -1.1973 13 6 2.2451 -3.6621 0.0005 14 7 3.0038 -3.6560 1.2539 15 6 2.5401 -4.2663 2.5054 16 6 3.4206 -3.6503 3.6153 17 6 4.6949 -3.2643 2.8289 18 6 4.2164 -3.0958 1.4037 19 8 4.8357 -2.5346 0.5248 20 1 -0.4850 0.8401 0.0004 21 1 1.0035 -2.6013 -2.1369 22 1 -0.2834 -1.7103 -1.2894 23 1 -0.9879 -3.8383 -0.3502 24 1 -1.0310 -3.8799 -2.0121 25 1 1.7033 -4.6034 -0.0915 26 1 2.9309 -3.5539 -0.8397 27 1 1.4915 -4.0236 2.6777 28 1 2.6758 -5.3473 2.4710 29 1 2.9457 -2.7685 4.0456 30 1 3.6464 -4.3857 4.3874 31 1 5.1090 -2.3301 3.2083 32 1 5.4361 -4.0613 2.8888 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260930394.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:01 Heat of formation + Delta-G solvation = -65.619978 kcal Electronic energy + Delta-G solvation = -14788.711815 eV Core-core repulsion = 12361.720299 eV Total energy + Delta-G solvation = -2426.991516 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09808 -37.60105 -36.91990 -34.12100 -33.45496 -30.39508 -28.29491 -26.80382 -25.23384 -22.62526 -21.64278 -20.12548 -18.56632 -17.51959 -17.32287 -16.58579 -16.25107 -15.98111 -15.21992 -14.62453 -14.54661 -14.34678 -13.97369 -13.83698 -13.34432 -12.94805 -12.90356 -12.71852 -12.53675 -12.17408 -11.94379 -11.77633 -11.54153 -10.96098 -10.59398 -10.51415 -9.52477 -9.17818 -8.10604 -6.20918 1.32081 1.33447 1.43013 1.82000 2.39530 2.45293 3.13988 3.61026 3.76519 4.06932 4.14887 4.37024 4.47171 4.64291 4.77154 4.78881 4.92088 4.97185 5.00660 5.12849 5.14830 5.32100 5.53735 5.72146 5.90806 6.00762 6.26825 6.49664 6.58001 6.76443 6.96820 7.44070 7.46972 8.90284 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.013822 C = 0.010134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.219156 B = 2025.289788 C = 2762.258387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.937 3.063 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.048 0.952 9 C 0.047 3.953 10 H 0.007 0.993 11 C 0.072 3.928 12 N -0.845 5.845 13 C 0.150 3.850 14 N -0.609 5.609 15 C 0.096 3.904 16 C -0.117 4.117 17 C -0.146 4.146 18 C 0.493 3.507 19 O -0.596 6.596 20 H 0.259 0.741 21 H 0.030 0.970 22 H 0.039 0.961 23 H 0.337 0.663 24 H 0.337 0.663 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 -9.461 7.601 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.764 3.236 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.027 3.973 10 H 0.025 0.975 11 C -0.059 4.059 12 N -0.373 5.373 13 C 0.028 3.972 14 N -0.340 5.340 15 C -0.026 4.026 16 C -0.154 4.154 17 C -0.186 4.186 18 C 0.282 3.718 19 O -0.478 6.478 20 H 0.068 0.932 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.148 0.852 24 H 0.148 0.852 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.730 -9.447 7.077 12.115 hybrid contribution -0.545 2.035 -0.468 2.158 sum 2.185 -7.411 6.609 10.168 Atomic orbital electron populations 1.69949 1.06405 1.26790 1.52213 1.25516 0.95567 1.01444 0.95352 0.85946 0.78645 0.80681 0.78341 1.20864 1.20162 1.20503 1.21609 0.93263 0.91976 1.48928 0.93342 1.18899 0.92701 0.92228 0.93451 0.97496 1.21657 0.95960 0.90494 0.97793 1.58935 1.30596 1.40413 1.07345 1.21278 0.92992 0.99242 0.83728 1.48388 1.18224 1.55028 1.12344 1.22290 0.99639 0.98388 0.82277 1.22613 0.93196 1.02518 0.97094 1.22340 1.00459 1.05248 0.90572 1.21753 0.81601 0.76636 0.91787 1.90617 1.61897 1.45483 1.49802 0.93192 0.95118 0.94322 0.85208 0.85184 0.89545 0.94439 0.91080 0.88670 0.90944 0.85202 0.88591 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.56 11.30 21.45 0.24 -52.31 16 2 C 0.02 1.11 5.29 84.65 0.45 1.56 16 3 Si 0.94 46.88 29.54 68.60 2.03 48.91 16 4 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.52 -29.95 8.13 25.60 0.21 -29.75 16 8 H 0.05 3.01 5.52 -2.91 -0.02 3.00 16 9 C 0.05 2.34 2.13 -11.54 -0.02 2.31 16 10 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 11 C 0.07 3.41 6.01 86.30 0.52 3.93 16 12 N -0.84 -30.83 8.97 -186.73 -1.67 -32.50 16 13 C 0.15 6.52 5.30 86.38 0.46 6.98 16 14 N -0.61 -23.60 2.76 -817.96 -2.26 -25.86 16 15 C 0.10 2.57 7.35 86.83 0.64 3.21 16 16 C -0.12 -2.50 7.18 31.65 0.23 -2.27 16 17 C -0.15 -3.97 6.86 30.59 0.21 -3.76 16 18 C 0.49 20.45 7.31 87.90 0.64 21.09 16 19 O -0.60 -31.12 15.94 -3.04 -0.05 -31.17 16 20 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 21 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.04 2.05 5.97 -2.39 -0.01 2.04 16 23 H 0.34 11.71 8.99 -89.69 -0.81 10.91 16 24 H 0.34 10.68 9.08 -89.69 -0.81 9.86 16 25 H 0.09 3.32 7.59 -2.39 -0.02 3.31 16 26 H 0.04 1.83 7.80 -2.39 -0.02 1.81 16 27 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -71.42 263.77 1.12 -70.30 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.49 Total: 19.33 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 3.33 Total: 3.30 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.69 Total: -110.67 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.05 Total: -31.17 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -71.42 1.12 -70.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260930394.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.683 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds