Wall clock time and date at job start Mon Mar 30 2020 02:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99859 * 2 1 4 4 H 1.48505 * 109.47251 * 240.00308 * 3 2 1 5 5 H 1.48502 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46950 * 120.00657 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46885 * 184.93425 * 10 9 7 12 12 H 1.08995 * 110.00204 * 306.55338 * 11 10 9 13 13 C 1.54370 * 109.89966 * 67.62393 * 11 10 9 14 14 C 1.55162 * 102.91865 * 141.57392 * 13 11 10 15 15 C 1.54902 * 101.61653 * 324.53965 * 14 13 11 16 16 N 1.47025 * 109.88012 * 185.45819 * 11 10 9 17 17 C 1.34780 * 125.64632 * 61.68069 * 16 11 10 18 18 N 1.34775 * 120.00152 * 175.06038 * 17 16 11 19 19 O 1.21588 * 120.00179 * 355.05940 * 17 16 11 20 20 H 0.97000 * 119.99747 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47370 * 59.99692 * 9 7 2 22 22 H 1.09008 * 109.47010 * 300.00231 * 9 7 2 23 23 H 1.08996 * 109.47105 * 64.93560 * 10 9 7 24 24 H 1.09000 * 109.46881 * 304.93279 * 10 9 7 25 25 H 1.08998 * 110.71067 * 23.23244 * 13 11 10 26 26 H 1.09001 * 110.75496 * 259.93832 * 13 11 10 27 27 H 1.09000 * 111.00179 * 206.44690 * 14 13 11 28 28 H 1.08997 * 111.00554 * 82.63941 * 14 13 11 29 29 H 1.09006 * 110.36410 * 155.82482 * 15 14 13 30 30 H 1.08991 * 110.37142 * 278.04222 * 15 14 13 31 31 H 0.97001 * 119.99943 * 359.97438 * 18 17 16 32 32 H 0.96996 * 120.00449 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4843 -4.9835 -0.1267 12 1 0.7168 -5.0463 0.6446 13 6 0.8338 -5.0849 -1.5230 14 6 1.0172 -6.5830 -1.8831 15 6 2.3968 -6.8896 -1.2489 16 7 2.4175 -6.1121 0.0034 17 6 3.1673 -6.3902 1.0884 18 7 3.9125 -7.5127 1.1228 19 8 3.1716 -5.6284 2.0360 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6240 -2.5574 0.8880 23 1 2.8115 -3.6557 0.9298 24 1 2.9292 -3.5554 -0.8434 25 1 1.3558 -4.4496 -2.2385 26 1 -0.2241 -4.8264 -1.4760 27 1 1.0437 -6.7246 -2.9636 28 1 0.2349 -7.1923 -1.4305 29 1 2.4879 -7.9547 -1.0356 30 1 3.1993 -6.5661 -1.9116 31 1 3.9088 -8.1207 0.3670 32 1 4.4518 -7.7131 1.9037 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260975531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:41 Heat of formation + Delta-G solvation = -45.379558 kcal Electronic energy + Delta-G solvation = -14328.031312 eV Core-core repulsion = 11901.917487 eV Total energy + Delta-G solvation = -2426.113825 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.99480 -37.33067 -34.02231 -33.18473 -31.35501 -30.92362 -27.72454 -24.72756 -23.03890 -21.39397 -20.33734 -19.17142 -17.92743 -16.69283 -16.10460 -15.66191 -14.64959 -14.36242 -14.29804 -13.65618 -13.00890 -12.84301 -12.54048 -12.00222 -11.95390 -11.24004 -11.06789 -10.83534 -10.58695 -10.50754 -10.35912 -10.00898 -9.56018 -9.39260 -9.26735 -9.02194 -8.24478 -8.18364 -5.90941 -3.91915 3.02696 3.39876 3.43340 3.47087 3.49184 4.34885 4.54544 4.68084 4.93062 5.07348 5.44760 5.45173 5.52998 5.68337 5.88523 6.00975 6.18678 6.29424 6.40612 6.54272 6.82483 6.94462 7.02262 7.27177 7.31022 7.79110 7.95818 8.10407 8.16894 8.54690 8.89665 9.14590 9.71152 11.20519 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040302 B = 0.007459 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.584015 B = 3753.069526 C = 4194.888422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.026 3.974 10 C -0.120 4.120 11 C 0.153 3.847 12 H 0.070 0.930 13 C -0.123 4.123 14 C -0.134 4.134 15 C 0.101 3.899 16 N -0.632 5.632 17 C 0.718 3.282 18 N -0.872 5.872 19 O -0.582 6.582 20 H 0.260 0.740 21 H 0.017 0.983 22 H 0.015 0.985 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.392 0.608 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -16.627 -4.574 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.158 4.158 11 C 0.051 3.949 12 H 0.088 0.912 13 C -0.161 4.161 14 C -0.172 4.172 15 C -0.023 4.023 16 N -0.370 5.370 17 C 0.419 3.581 18 N -0.441 5.441 19 O -0.459 6.459 20 H 0.069 0.931 21 H 0.036 0.964 22 H 0.033 0.967 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.219 0.781 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.540 -15.897 -3.946 16.757 hybrid contribution 0.732 0.490 -0.097 0.886 sum 4.272 -15.407 -4.043 16.491 Atomic orbital electron populations 1.69955 1.05983 1.26529 1.51262 1.25002 0.94839 0.99107 0.95494 0.86679 0.79598 0.83253 0.78592 1.20333 1.21320 1.20272 1.21230 0.93005 0.91135 1.50052 0.92892 1.19054 0.93887 0.91098 0.97112 1.22035 0.99398 0.92885 1.01517 1.21698 0.90409 0.86014 0.96824 0.91217 1.22726 1.01978 0.95076 0.96298 1.22771 0.96063 0.97686 1.00676 1.22217 0.98502 0.95158 0.86399 1.47792 1.45218 1.30633 1.13405 1.15498 0.78693 0.81697 0.82251 1.43039 1.52446 1.24993 1.23653 1.90998 1.69021 1.49587 1.36289 0.93073 0.96430 0.96653 0.91554 0.93594 0.90000 0.89854 0.90173 0.90934 0.91741 0.91699 0.78058 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.38 9.11 -34.44 -0.31 -15.70 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.70 4.89 -27.88 -0.14 0.57 16 10 C -0.12 -2.74 4.63 -26.73 -0.12 -2.86 16 11 C 0.15 2.82 2.92 -66.92 -0.20 2.63 16 12 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 13 C -0.12 -1.83 5.56 -24.87 -0.14 -1.97 16 14 C -0.13 -1.44 7.08 -24.58 -0.17 -1.61 16 15 C 0.10 1.11 6.68 -2.53 -0.02 1.09 16 16 N -0.63 -9.95 3.06 -168.67 -0.52 -10.47 16 17 C 0.72 12.20 8.58 -86.92 -0.75 11.46 16 18 N -0.87 -9.69 8.83 27.63 0.24 -9.45 16 19 O -0.58 -12.93 15.97 5.29 0.08 -12.85 16 20 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 21 H 0.02 0.47 7.36 -51.93 -0.38 0.09 16 22 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.07 1.69 6.55 -51.93 -0.34 1.35 16 24 H 0.05 1.03 8.01 -51.93 -0.42 0.61 16 25 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.52 7.12 -51.93 -0.37 0.15 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.39 3.06 7.23 -40.82 -0.30 2.76 16 32 H 0.41 3.96 8.93 -40.82 -0.36 3.59 16 LS Contribution 264.77 15.07 3.99 3.99 Total: -1.00 -35.27 264.77 -7.07 -42.35 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.65 Total: 0.72 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.94 Total: -4.82 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.46 Total: -46.88 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.27 -7.07 -42.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.033 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds