Wall clock time and date at job start Mon Mar 30 2020 02:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99859 * 2 1 4 4 H 1.48505 * 109.47251 * 240.00308 * 3 2 1 5 5 H 1.48502 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46950 * 120.00657 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46885 * 184.93425 * 10 9 7 12 12 H 1.08995 * 110.00204 * 306.55338 * 11 10 9 13 13 C 1.54370 * 109.89966 * 67.62393 * 11 10 9 14 14 C 1.55162 * 102.91865 * 141.57392 * 13 11 10 15 15 C 1.54902 * 101.61653 * 324.53965 * 14 13 11 16 16 N 1.47025 * 109.88012 * 185.45819 * 11 10 9 17 17 C 1.34780 * 125.64632 * 61.68069 * 16 11 10 18 18 N 1.34775 * 120.00152 * 175.06038 * 17 16 11 19 19 O 1.21588 * 120.00179 * 355.05940 * 17 16 11 20 20 H 0.97000 * 119.99747 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47370 * 59.99692 * 9 7 2 22 22 H 1.09008 * 109.47010 * 300.00231 * 9 7 2 23 23 H 1.08996 * 109.47105 * 64.93560 * 10 9 7 24 24 H 1.09000 * 109.46881 * 304.93279 * 10 9 7 25 25 H 1.08998 * 110.71067 * 23.23244 * 13 11 10 26 26 H 1.09001 * 110.75496 * 259.93832 * 13 11 10 27 27 H 1.09000 * 111.00179 * 206.44690 * 14 13 11 28 28 H 1.08997 * 111.00554 * 82.63941 * 14 13 11 29 29 H 1.09006 * 110.36410 * 155.82482 * 15 14 13 30 30 H 1.08991 * 110.37142 * 278.04222 * 15 14 13 31 31 H 0.97001 * 119.99943 * 359.97438 * 18 17 16 32 32 H 0.96996 * 120.00449 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4843 -4.9835 -0.1267 12 1 0.7168 -5.0463 0.6446 13 6 0.8338 -5.0849 -1.5230 14 6 1.0172 -6.5830 -1.8831 15 6 2.3968 -6.8896 -1.2489 16 7 2.4175 -6.1121 0.0034 17 6 3.1673 -6.3902 1.0884 18 7 3.9125 -7.5127 1.1228 19 8 3.1716 -5.6284 2.0360 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6240 -2.5574 0.8880 23 1 2.8115 -3.6557 0.9298 24 1 2.9292 -3.5554 -0.8434 25 1 1.3558 -4.4496 -2.2385 26 1 -0.2241 -4.8264 -1.4760 27 1 1.0437 -6.7246 -2.9636 28 1 0.2349 -7.1923 -1.4305 29 1 2.4879 -7.9547 -1.0356 30 1 3.1993 -6.5661 -1.9116 31 1 3.9088 -8.1207 0.3670 32 1 4.4518 -7.7131 1.9037 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:41 Heat of formation + Delta-G solvation = -72.018776 kcal Electronic energy + Delta-G solvation = -14329.186475 eV Core-core repulsion = 11901.917487 eV Total energy + Delta-G solvation = -2427.268989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27866 -38.65581 -35.84695 -34.74829 -33.22143 -32.05571 -29.41499 -26.48548 -24.53893 -22.86502 -21.81808 -20.54383 -19.20393 -18.31765 -17.84564 -16.88149 -16.42153 -15.98728 -15.52424 -15.33395 -14.51741 -14.16973 -13.94228 -13.80164 -13.45270 -13.09200 -12.75048 -12.47464 -12.24863 -12.03133 -11.75451 -11.53701 -11.43786 -11.17974 -11.10844 -10.68219 -10.53691 -9.50847 -8.20745 -6.31814 1.36837 1.41035 1.48925 1.82738 2.17753 2.40275 3.11280 3.37923 3.71329 3.80763 4.04724 4.30392 4.47803 4.51478 4.68340 4.77552 4.91723 5.02969 5.08238 5.16536 5.21592 5.37038 5.44543 5.52183 5.75665 5.84786 6.03170 6.05746 6.26441 6.82777 7.04596 7.36421 7.68380 8.90736 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040302 B = 0.007459 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.584015 B = 3753.069526 C = 4194.888422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.035 3.965 10 C -0.103 4.103 11 C 0.155 3.845 12 H 0.045 0.955 13 C -0.122 4.122 14 C -0.118 4.118 15 C 0.095 3.905 16 N -0.633 5.633 17 C 0.708 3.292 18 N -0.842 5.842 19 O -0.646 6.646 20 H 0.265 0.735 21 H 0.012 0.988 22 H -0.020 1.020 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.413 0.587 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -18.014 -6.254 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.003 4.003 10 C -0.141 4.141 11 C 0.051 3.949 12 H 0.063 0.937 13 C -0.160 4.160 14 C -0.156 4.156 15 C -0.027 4.027 16 N -0.371 5.371 17 C 0.408 3.592 18 N -0.412 5.412 19 O -0.528 6.528 20 H 0.074 0.926 21 H 0.031 0.969 22 H -0.002 1.002 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.244 0.756 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.453 -17.365 -5.676 18.804 hybrid contribution 0.444 0.887 0.438 1.084 sum 4.897 -16.479 -5.238 17.971 Atomic orbital electron populations 1.70075 1.07596 1.27891 1.51400 1.25941 0.95852 1.03151 0.94554 0.85528 0.78401 0.78207 0.79075 1.18808 1.20129 1.19901 1.21633 0.93184 0.92797 1.51028 0.93212 1.18897 0.94052 0.92331 0.95000 1.21752 0.98377 0.94278 0.99727 1.21424 0.89954 0.84988 0.98549 0.93717 1.22657 1.01079 0.98724 0.93566 1.22787 0.96165 0.93824 1.02803 1.22592 0.99103 0.96779 0.84190 1.47747 1.44279 1.30218 1.14847 1.15843 0.79160 0.82433 0.81756 1.42690 1.50634 1.23163 1.24747 1.90957 1.71128 1.51998 1.38700 0.92608 0.96926 1.00183 0.94865 0.93308 0.90803 0.90257 0.86927 0.89747 0.87660 0.90490 0.75568 0.74679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 4 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.55 -33.76 9.11 25.60 0.23 -33.52 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.98 4.89 29.85 0.15 2.13 16 10 C -0.10 -4.92 4.63 30.59 0.14 -4.78 16 11 C 0.16 5.85 2.92 45.36 0.13 5.98 16 12 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.12 -3.54 5.56 31.80 0.18 -3.37 16 14 C -0.12 -2.10 7.08 31.99 0.23 -1.87 16 15 C 0.09 1.72 6.68 86.85 0.58 2.30 16 16 N -0.63 -19.28 3.06 -805.80 -2.47 -21.75 16 17 C 0.71 23.71 8.58 179.05 1.54 25.25 16 18 N -0.84 -16.77 8.83 -184.74 -1.63 -18.40 16 19 O -0.65 -29.78 15.97 -3.99 -0.06 -29.84 16 20 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 21 H 0.01 0.71 7.36 -2.39 -0.02 0.69 16 22 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 23 H 0.03 1.78 6.55 -2.39 -0.02 1.77 16 24 H 0.05 2.25 8.01 -2.39 -0.02 2.23 16 25 H 0.07 2.26 7.76 -2.39 -0.02 2.24 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.11 7.12 -2.38 -0.02 1.09 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.41 4.82 7.23 -92.71 -0.67 4.15 16 32 H 0.42 7.26 8.93 -92.71 -0.83 6.43 16 Total: -1.00 -80.72 264.77 1.41 -79.31 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.37 Total: 7.57 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 3.63 Total: -7.24 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -3.82 Total: -98.31 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.06 Total: -29.84 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -80.72 1.41 -79.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.296 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds