Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.52994 * 109.47347 * 185.00014 * 10 9 7 14 14 N 1.46500 * 109.47406 * 184.99783 * 13 10 9 15 15 C 1.46761 * 124.35015 * 89.99656 * 14 13 10 16 16 C 1.54472 * 105.47414 * 197.01800 * 15 14 13 17 17 C 1.54624 * 101.76760 * 334.58661 * 16 15 14 18 18 C 1.34415 * 124.34979 * 269.69948 * 14 13 10 19 19 O 1.21289 * 124.94038 * 359.57436 * 18 14 13 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 24 24 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 25 25 H 1.09001 * 109.46798 * 305.00118 * 13 10 9 26 26 H 1.09004 * 109.47337 * 64.99955 * 13 10 9 27 27 H 1.09002 * 110.24503 * 316.01995 * 15 14 13 28 28 H 1.08999 * 110.24758 * 77.92720 * 15 14 13 29 29 H 1.09005 * 110.96897 * 92.70337 * 16 15 14 30 30 H 1.09003 * 110.97197 * 216.46140 * 16 15 14 31 31 H 1.08997 * 110.48785 * 143.47474 * 17 16 15 32 32 H 1.09008 * 110.48273 * 265.98820 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4843 -4.9830 -0.1421 14 7 2.4237 -6.1013 -0.0273 15 6 2.7833 -6.7542 1.2369 16 6 4.0801 -7.5395 0.9408 17 6 3.9623 -7.7802 -0.5820 18 6 3.0626 -6.6649 -1.0670 19 8 2.9380 -6.3266 -2.2250 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 3.5699 -2.8253 1.3248 24 1 2.3958 -3.7609 2.0403 25 1 0.7378 -5.0527 0.6491 26 1 0.9896 -5.0222 -1.1127 27 1 2.9631 -6.0067 2.0097 28 1 1.9912 -7.4350 1.5485 29 1 4.9606 -6.9408 1.1741 30 1 4.0972 -8.4839 1.4849 31 1 4.9421 -7.7168 -1.0552 32 1 3.5057 -8.7499 -0.7807 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261015959.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = -72.286446 kcal Electronic energy + Delta-G solvation = -14288.849495 eV Core-core repulsion = 11861.568899 eV Total energy + Delta-G solvation = -2427.280596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21430 -37.91882 -36.96353 -34.67307 -32.79967 -30.01690 -28.34165 -28.16042 -25.09334 -22.60388 -21.74581 -20.22306 -18.71292 -17.62149 -17.31014 -16.59713 -16.51801 -16.24287 -15.02300 -14.79382 -14.58483 -14.27487 -14.13663 -13.81219 -13.34151 -13.30465 -12.84364 -12.75425 -12.50142 -12.25142 -12.06283 -11.82157 -11.70817 -11.28923 -10.74167 -10.65038 -9.68942 -9.23191 -8.25855 -6.37208 1.35685 1.37527 1.49637 1.66365 2.23116 2.36934 3.07523 3.55211 3.78100 3.86693 4.12727 4.18064 4.26318 4.37451 4.70735 4.79606 4.82968 4.84225 4.89788 5.06531 5.17219 5.32094 5.37070 5.51329 5.69042 5.73347 6.13758 6.31546 6.42120 6.73385 6.78608 7.27512 7.32634 8.85592 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.053737 B = 0.006721 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.927365 B = 4164.908231 C = 4234.256486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.003 3.997 10 C 0.096 3.904 11 H 0.037 0.963 12 N -0.816 5.816 13 C 0.138 3.862 14 N -0.597 5.597 15 C 0.097 3.903 16 C -0.115 4.115 17 C -0.144 4.144 18 C 0.490 3.510 19 O -0.604 6.604 20 H 0.264 0.736 21 H 0.005 0.995 22 H -0.016 1.016 23 H 0.339 0.661 24 H 0.336 0.664 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -14.904 6.616 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.077 0.923 9 C -0.037 4.037 10 C -0.018 4.018 11 H 0.055 0.945 12 N -0.343 5.343 13 C 0.014 3.986 14 N -0.328 5.328 15 C -0.025 4.025 16 C -0.152 4.152 17 C -0.184 4.184 18 C 0.280 3.720 19 O -0.487 6.487 20 H 0.072 0.928 21 H 0.024 0.976 22 H 0.003 0.997 23 H 0.152 0.848 24 H 0.148 0.852 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.121 0.879 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.085 -15.242 5.770 17.771 hybrid contribution -0.724 2.281 -0.265 2.408 sum 6.361 -12.960 5.505 15.451 Atomic orbital electron populations 1.70097 1.07757 1.27732 1.51469 1.25932 0.95705 1.03257 0.94668 0.85408 0.79046 0.78938 0.77690 1.18709 1.20929 1.20070 1.21533 0.93244 0.91952 1.50654 0.92284 1.19685 0.94834 0.93858 0.95286 1.21531 0.94229 0.93117 0.92877 0.94475 1.59188 1.27124 1.45056 1.02959 1.21311 0.90924 0.84548 1.01768 1.48250 1.43208 1.32001 1.09336 1.22386 0.97793 0.96859 0.85446 1.22592 0.97089 1.02216 0.93322 1.22328 1.00125 0.97427 0.98482 1.21957 0.81198 0.84429 0.84453 1.90666 1.68053 1.68919 1.21031 0.92759 0.97642 0.99742 0.84822 0.85211 0.89074 0.92565 0.89098 0.89749 0.90033 0.85933 0.87908 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -29.83 8.55 25.60 0.22 -29.61 16 8 H 0.06 3.19 7.15 -2.91 -0.02 3.17 16 9 C 0.00 0.14 4.62 29.85 0.14 0.27 16 10 C 0.10 4.02 3.06 44.91 0.14 4.15 16 11 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 12 N -0.82 -28.26 7.71 -168.68 -1.30 -29.56 16 13 C 0.14 4.98 5.61 86.38 0.48 5.47 16 14 N -0.60 -18.08 2.75 -818.00 -2.25 -20.33 16 15 C 0.10 1.90 7.10 86.83 0.62 2.52 16 16 C -0.11 -1.66 7.18 31.65 0.23 -1.43 16 17 C -0.14 -2.86 6.86 30.59 0.21 -2.65 16 18 C 0.49 16.29 8.02 87.90 0.71 16.99 16 19 O -0.60 -26.77 17.59 -3.06 -0.05 -26.83 16 20 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 21 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 22 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 23 H 0.34 12.56 7.90 -89.70 -0.71 11.85 16 24 H 0.34 10.58 8.87 -89.69 -0.80 9.78 16 25 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 26 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 27 H 0.09 1.83 6.98 -2.39 -0.02 1.81 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -71.93 269.05 1.52 -70.41 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.39 Total: 19.62 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 3.20 Total: -3.68 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.26 Total: -105.78 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.93 1.52 -70.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015959.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.875 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds