Wall clock time and date at job start Mon Mar 30 2020 02:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00031 * 2 1 4 4 O 1.20828 * 119.99921 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00205 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.43218 * 298.91295 * 5 3 2 7 7 C 1.54267 * 110.48332 * 61.45039 * 5 3 2 8 8 C 1.53873 * 106.59510 * 142.29033 * 7 5 3 9 9 C 1.54268 * 106.59981 * 0.02562 * 8 7 5 10 10 H 1.08998 * 110.48568 * 95.20163 * 9 8 7 11 11 C 1.52998 * 110.48831 * 217.71141 * 9 8 7 12 12 C 1.50706 * 109.47348 * 291.75801 * 11 9 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.54884 * 104.31294 * 336.45631 * 9 8 7 21 21 H 1.09004 * 109.47207 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46884 * 299.99912 * 1 2 3 23 23 H 1.08993 * 109.47135 * 59.99754 * 1 2 3 24 24 H 1.08995 * 110.03348 * 23.01213 * 7 5 3 25 25 H 1.08998 * 110.03489 * 261.57300 * 7 5 3 26 26 H 1.09007 * 110.03501 * 240.71743 * 8 7 5 27 27 H 1.08998 * 110.03419 * 119.28323 * 8 7 5 28 28 H 1.09001 * 109.47671 * 171.76010 * 11 9 8 29 29 H 1.09006 * 109.47297 * 51.75730 * 11 9 8 30 30 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 31 31 H 1.09004 * 110.75474 * 156.19294 * 20 9 8 32 32 H 1.09004 * 110.75467 * 279.55967 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9718 0.8018 0.8949 7 6 4.1421 0.6132 -1.2685 8 6 5.3458 1.4679 -1.7023 9 6 5.4599 2.6188 -0.6813 10 1 6.1748 2.3650 0.1013 11 6 5.8713 3.9160 -1.3804 12 6 7.2884 3.7911 -1.8777 13 1 7.8406 2.8779 -1.7114 14 6 7.8801 4.8426 -2.5451 15 7 7.2079 5.9548 -2.7472 16 14 9.6369 4.6879 -3.1608 17 1 10.0357 5.9465 -3.8406 18 1 10.5437 4.4363 -2.0121 19 1 9.7275 3.5578 -4.1199 20 6 4.0339 2.7498 -0.0911 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.3898 0.6004 -2.0570 25 1 4.4669 -0.4030 -1.0452 26 1 5.1776 1.8700 -2.7014 27 1 6.2548 0.8666 -1.6894 28 1 5.8053 4.7452 -0.6760 29 1 5.2055 4.1015 -2.2234 30 1 6.2958 6.0352 -2.4271 31 1 4.0654 3.2097 0.8967 32 1 3.3887 3.3171 -0.7621 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261079309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:04 Heat of formation + Delta-G solvation = -118.974172 kcal Electronic energy + Delta-G solvation = -14115.634693 eV Core-core repulsion = 11654.036815 eV Total energy + Delta-G solvation = -2461.597879 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.54918 -37.78010 -36.28301 -33.38230 -30.52552 -28.63886 -27.74103 -25.58191 -22.69219 -21.96335 -19.82168 -19.26529 -17.36584 -16.84213 -16.53043 -16.12293 -15.23012 -14.04214 -13.66917 -13.40610 -13.06363 -12.98581 -12.75183 -12.21253 -11.74426 -11.43572 -11.06303 -10.92032 -10.84832 -10.67988 -10.47091 -10.29980 -10.14984 -10.01999 -9.78204 -9.42626 -8.45089 -8.27591 -6.30303 -3.99034 2.27570 2.75027 3.46345 3.48304 3.67007 4.58404 4.66620 4.87800 4.98804 5.00572 5.07027 5.29035 5.45615 5.46615 5.73449 5.85803 5.90852 5.94606 6.09401 6.25308 6.38329 6.45210 6.59984 6.80937 6.88221 7.06631 7.44855 7.60504 7.80796 8.27559 8.52136 8.94320 9.73116 11.10169 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.072712 B = 0.006043 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.990639 B = 4632.131332 C = 4844.056542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.507 6.507 5 C -0.088 4.088 6 H 0.109 0.891 7 C -0.110 4.110 8 C -0.107 4.107 9 C -0.076 4.076 10 H 0.065 0.935 11 C 0.016 3.984 12 C -0.597 4.597 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 1.067 2.933 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.289 1.289 20 C -0.105 4.105 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.269 0.731 31 H 0.066 0.934 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.290 -12.557 5.064 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.107 4.107 6 H 0.127 0.873 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.094 4.094 10 H 0.083 0.917 11 C -0.021 4.021 12 C -0.635 4.635 13 H 0.067 0.933 14 C -0.191 4.191 15 N -0.552 5.552 16 Si 0.896 3.104 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.143 4.143 21 H 0.117 0.883 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.322 -11.453 4.252 14.781 hybrid contribution -1.538 -0.834 0.880 1.958 sum -9.859 -12.286 5.131 16.568 Atomic orbital electron populations 1.23224 0.77008 1.03354 1.02431 1.86541 1.22960 1.34002 1.84301 1.24049 0.92277 0.81009 0.71643 1.90653 1.67178 1.36411 1.45103 1.22091 0.85640 1.01066 1.01897 0.87350 1.22152 0.98551 0.99301 0.94804 1.22090 0.95905 0.96177 1.00304 1.21936 0.93206 0.97436 0.96862 0.91664 1.19269 0.96865 0.91400 0.94598 1.22033 0.98694 1.02677 1.40085 0.93299 1.25820 1.05440 0.92769 0.95029 1.70776 1.12648 1.26964 1.44775 0.83568 0.74720 0.75802 0.76321 1.20872 1.21521 1.21522 1.22656 0.98096 0.91736 1.01772 0.88338 0.92109 0.92021 0.92029 0.91156 0.91235 0.91882 0.97475 0.97329 0.92103 0.91515 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.74 10.54 -39.24 -0.41 -5.16 16 3 C 0.47 7.17 7.12 36.01 0.26 7.42 16 4 O -0.51 -9.15 15.51 -18.75 -0.29 -9.44 16 5 C -0.09 -1.30 3.36 -90.05 -0.30 -1.60 16 6 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 7 C -0.11 -1.61 6.35 -25.61 -0.16 -1.77 16 8 C -0.11 -1.94 5.96 -25.61 -0.15 -2.09 16 9 C -0.08 -1.53 2.82 -88.96 -0.25 -1.78 16 10 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.02 0.40 3.68 -27.88 -0.10 0.30 16 12 C -0.60 -16.82 8.71 -34.44 -0.30 -17.12 16 13 H 0.05 1.34 7.73 -52.48 -0.41 0.94 16 14 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 15 N -0.92 -28.40 13.65 55.43 0.76 -27.64 16 16 Si 1.07 25.41 29.90 -169.99 -5.08 20.32 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 20 C -0.11 -1.87 5.36 -24.68 -0.13 -2.00 16 21 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 23 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 24 H 0.06 0.89 7.83 -51.93 -0.41 0.48 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.38 7.75 -51.93 -0.40 0.98 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 29 H 0.01 0.23 7.87 -51.93 -0.41 -0.18 16 30 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.50 7.44 -51.93 -0.39 1.11 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -32.06 269.26 -6.05 -38.11 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.90 Total: -3.26 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.18 Total: -16.99 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 0.76 Total: -27.64 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.70 Total: -14.60 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.06 -6.05 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261079309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.862 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds