Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00031 * 2 1 4 4 O 1.20828 * 119.99921 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00205 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.43218 * 298.91295 * 5 3 2 7 7 C 1.54267 * 110.48332 * 61.45039 * 5 3 2 8 8 C 1.53873 * 106.59510 * 142.29033 * 7 5 3 9 9 C 1.54268 * 106.59981 * 0.02562 * 8 7 5 10 10 H 1.08998 * 110.48568 * 95.20163 * 9 8 7 11 11 C 1.52998 * 110.48831 * 217.71141 * 9 8 7 12 12 C 1.50706 * 109.47348 * 291.75801 * 11 9 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.54884 * 104.31294 * 336.45631 * 9 8 7 21 21 H 1.09004 * 109.47207 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46884 * 299.99912 * 1 2 3 23 23 H 1.08993 * 109.47135 * 59.99754 * 1 2 3 24 24 H 1.08995 * 110.03348 * 23.01213 * 7 5 3 25 25 H 1.08998 * 110.03489 * 261.57300 * 7 5 3 26 26 H 1.09007 * 110.03501 * 240.71743 * 8 7 5 27 27 H 1.08998 * 110.03419 * 119.28323 * 8 7 5 28 28 H 1.09001 * 109.47671 * 171.76010 * 11 9 8 29 29 H 1.09006 * 109.47297 * 51.75730 * 11 9 8 30 30 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 31 31 H 1.09004 * 110.75474 * 156.19294 * 20 9 8 32 32 H 1.09004 * 110.75467 * 279.55967 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9718 0.8018 0.8949 7 6 4.1421 0.6132 -1.2685 8 6 5.3458 1.4679 -1.7023 9 6 5.4599 2.6188 -0.6813 10 1 6.1748 2.3650 0.1013 11 6 5.8713 3.9160 -1.3804 12 6 7.2884 3.7911 -1.8777 13 1 7.8406 2.8779 -1.7114 14 6 7.8801 4.8426 -2.5451 15 7 7.2079 5.9548 -2.7472 16 14 9.6369 4.6879 -3.1608 17 1 10.0357 5.9465 -3.8406 18 1 10.5437 4.4363 -2.0121 19 1 9.7275 3.5578 -4.1199 20 6 4.0339 2.7498 -0.0911 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.3898 0.6004 -2.0570 25 1 4.4669 -0.4030 -1.0452 26 1 5.1776 1.8700 -2.7014 27 1 6.2548 0.8666 -1.6894 28 1 5.8053 4.7452 -0.6760 29 1 5.2055 4.1015 -2.2234 30 1 6.2958 6.0352 -2.4271 31 1 4.0654 3.2097 0.8967 32 1 3.3887 3.3171 -0.7621 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261079309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -138.051815 kcal Electronic energy + Delta-G solvation = -14116.461962 eV Core-core repulsion = 11654.036815 eV Total energy + Delta-G solvation = -2462.425147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.72954 -39.17768 -37.48086 -35.46392 -32.23642 -29.99491 -28.84900 -27.30167 -24.63975 -23.31499 -21.03745 -20.85622 -18.91312 -18.44142 -17.81148 -17.33959 -16.54087 -15.65847 -15.39152 -14.75856 -14.60462 -14.49155 -14.11334 -13.71826 -13.17611 -12.90525 -12.78739 -12.50412 -12.21838 -12.00436 -11.91470 -11.84072 -11.69509 -11.49255 -11.45483 -11.14064 -10.56154 -10.50469 -8.64380 -6.34180 1.09561 1.54213 1.63261 1.70844 1.81765 2.60233 3.20155 3.39468 3.60371 3.79491 4.15974 4.29422 4.30124 4.39115 4.45514 4.49866 4.56688 4.66641 4.69303 4.85259 4.96608 5.08461 5.15344 5.26183 5.30694 5.37107 5.46407 5.67025 6.05234 6.23223 6.61373 6.67144 7.48631 8.75884 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.072712 B = 0.006043 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.990639 B = 4632.131332 C = 4844.056542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.542 6.542 5 C -0.080 4.080 6 H 0.142 0.858 7 C -0.098 4.098 8 C -0.105 4.105 9 C -0.074 4.074 10 H 0.073 0.927 11 C 0.016 3.984 12 C -0.604 4.604 13 H 0.058 0.942 14 C -0.045 4.045 15 N -0.944 5.944 16 Si 1.118 2.882 17 H -0.288 1.288 18 H -0.267 1.267 19 H -0.267 1.267 20 C -0.102 4.102 21 H 0.136 0.864 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.041 0.959 27 H 0.072 0.928 28 H -0.019 1.019 29 H -0.019 1.019 30 H 0.252 0.748 31 H 0.072 0.928 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -15.299 5.687 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.432 6.432 5 C -0.099 4.099 6 H 0.160 0.840 7 C -0.136 4.136 8 C -0.143 4.143 9 C -0.092 4.092 10 H 0.091 0.909 11 C -0.021 4.021 12 C -0.642 4.642 13 H 0.076 0.924 14 C -0.241 4.241 15 N -0.582 5.582 16 Si 0.939 3.061 17 H -0.214 1.214 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.140 4.140 21 H 0.154 0.846 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.060 0.940 27 H 0.091 0.909 28 H -0.001 1.001 29 H -0.001 1.001 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.893 -14.237 4.890 16.997 hybrid contribution -1.764 0.014 0.701 1.898 sum -9.657 -14.223 5.591 18.078 Atomic orbital electron populations 1.23570 0.75005 1.05832 1.02337 1.86516 1.24841 1.32363 1.83584 1.24034 0.92380 0.81161 0.70779 1.90651 1.67932 1.37725 1.46900 1.22018 0.85770 0.98564 1.03525 0.84021 1.22075 0.96773 1.00207 0.94538 1.22016 0.98219 0.95874 0.98146 1.21818 0.94764 0.95349 0.97310 0.90901 1.19213 0.95677 0.93671 0.93496 1.22453 0.99690 1.02788 1.39290 0.92395 1.27474 1.09387 0.92253 0.95026 1.70922 1.12186 1.28466 1.46634 0.82933 0.70004 0.76248 0.76914 1.21367 1.19206 1.19218 1.22495 0.96121 0.94229 1.01164 0.84570 0.91973 0.92475 0.91988 0.87551 0.93981 0.90907 1.00098 1.00056 0.93888 0.90932 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.32 10.54 -51.36 -0.54 -8.86 16 3 C 0.47 13.59 7.12 71.24 0.51 14.09 16 4 O -0.54 -19.35 15.51 21.96 0.34 -19.01 16 5 C -0.08 -2.17 3.36 -10.43 -0.04 -2.21 16 6 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 7 C -0.10 -2.59 6.35 31.32 0.20 -2.39 16 8 C -0.10 -3.67 5.96 31.32 0.19 -3.48 16 9 C -0.07 -2.98 2.82 -9.72 -0.03 -3.01 16 10 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 11 C 0.02 0.87 3.68 29.85 0.11 0.98 16 12 C -0.60 -34.45 8.71 25.60 0.22 -34.23 16 13 H 0.06 3.14 7.73 -2.91 -0.02 3.11 16 14 C -0.05 -2.65 5.46 84.65 0.46 -2.19 16 15 N -0.94 -60.38 13.65 21.45 0.29 -60.09 16 16 Si 1.12 50.59 29.90 68.60 2.05 52.64 16 17 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 C -0.10 -3.63 5.36 31.92 0.17 -3.46 16 21 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 23 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 24 H 0.06 1.64 7.83 -2.39 -0.02 1.62 16 25 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 1.68 7.75 -2.38 -0.02 1.66 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H -0.02 -1.11 8.01 -2.39 -0.02 -1.13 16 29 H -0.02 -1.09 7.87 -2.38 -0.02 -1.11 16 30 H 0.25 16.48 7.22 -92.71 -0.67 15.81 16 31 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.05 2.03 7.44 -2.38 -0.02 2.02 16 Total: -1.00 -71.20 269.26 6.32 -64.88 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 1.18 Total: 4.69 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 2.99 Total: -34.25 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.29 Total: -60.09 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.20 Total: -27.87 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -71.20 6.32 -64.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261079309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.171 kcal (2) G-P(sol) polarization free energy of solvation -71.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds