Wall clock time and date at job start Mon Mar 30 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99845 * 2 1 4 4 O 1.20830 * 120.00054 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99906 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.42991 * 57.46534 * 5 3 2 7 7 C 1.54367 * 110.57707 * 294.83097 * 5 3 2 8 8 C 1.53876 * 106.54765 * 217.62905 * 7 5 3 9 9 C 1.54263 * 106.63651 * 0.04097 * 8 7 5 10 10 H 1.09005 * 110.48584 * 264.90184 * 9 8 7 11 11 C 1.53008 * 110.48662 * 142.39779 * 9 8 7 12 12 C 1.50696 * 109.47066 * 66.44907 * 11 9 8 13 13 H 1.08007 * 120.00357 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99997 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99728 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00151 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46834 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46972 * 120.00016 * 16 14 12 19 19 H 1.48500 * 109.46887 * 240.00331 * 16 14 12 20 20 C 1.54884 * 104.19983 * 23.58277 * 9 8 7 21 21 H 1.08995 * 109.47219 * 299.99669 * 1 2 3 22 22 H 1.08999 * 109.47145 * 59.99932 * 1 2 3 23 23 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 24 24 H 1.09002 * 110.04920 * 98.36502 * 7 5 3 25 25 H 1.09003 * 110.07124 * 336.90136 * 7 5 3 26 26 H 1.09002 * 110.03428 * 240.72988 * 8 7 5 27 27 H 1.08995 * 110.02995 * 119.34836 * 8 7 5 28 28 H 1.09000 * 109.47205 * 186.44997 * 11 9 8 29 29 H 1.09000 * 109.46713 * 306.45066 * 11 9 8 30 30 H 0.97003 * 119.99489 * 180.02562 * 15 14 12 31 31 H 1.09007 * 110.75453 * 80.37494 * 20 9 8 32 32 H 1.08998 * 110.75788 * 203.74013 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9754 0.7461 -0.8603 7 6 4.1394 0.6975 1.3125 8 6 5.3424 1.5792 1.6907 9 6 5.4580 2.6613 0.5974 10 1 6.1727 2.3564 -0.1671 11 6 5.8712 4.0006 1.2110 12 6 7.2725 3.8930 1.7549 13 1 7.8144 2.9625 1.6709 14 6 7.8628 4.9823 2.3597 15 7 7.2028 6.1152 2.4624 16 14 9.6002 4.8491 3.0333 17 1 10.1203 3.4790 2.7934 18 1 10.4733 5.8363 2.3491 19 1 9.5880 5.1262 4.4922 20 6 4.0317 2.7522 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.4645 -0.3313 1.1574 25 1 3.3858 0.7368 2.0991 26 1 6.2515 0.9784 1.7191 27 1 5.1730 2.0456 2.6612 28 1 5.8369 4.7767 0.4464 29 1 5.1864 4.2565 2.0195 30 1 7.6183 6.8817 2.8876 31 1 3.3860 3.3607 0.6339 32 1 4.0623 3.1476 -1.0148 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261079310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:05 Heat of formation + Delta-G solvation = -115.115884 kcal Electronic energy + Delta-G solvation = -14083.840913 eV Core-core repulsion = 11622.410343 eV Total energy + Delta-G solvation = -2461.430571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.48739 -37.68858 -36.20965 -33.06539 -30.61385 -28.58966 -27.74385 -25.93594 -22.71085 -21.82109 -19.73956 -19.06117 -17.27236 -16.65436 -16.23064 -16.06974 -15.12902 -14.48903 -13.80636 -13.32921 -12.98755 -12.88802 -12.29264 -12.12805 -11.71396 -11.33555 -11.09652 -10.88336 -10.80395 -10.76634 -10.41919 -10.38629 -10.18032 -9.97910 -9.65059 -9.13827 -8.93097 -8.31514 -5.95965 -3.97866 2.33555 2.80710 3.33000 3.40683 3.44236 4.48720 4.74543 4.95094 5.02963 5.07387 5.11965 5.34559 5.40002 5.51528 5.80754 5.95361 5.99269 6.03646 6.18187 6.35457 6.44806 6.55340 6.69931 6.91208 7.01990 7.21905 7.72305 7.86774 7.87328 8.04407 8.46832 9.09390 9.65960 11.15383 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.072965 B = 0.006019 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.653798 B = 4650.899597 C = 4862.195931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.088 4.088 6 H 0.107 0.893 7 C -0.110 4.110 8 C -0.108 4.108 9 C -0.082 4.082 10 H 0.063 0.937 11 C 0.028 3.972 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.105 4.105 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.016 0.984 29 H 0.018 0.982 30 H 0.259 0.741 31 H 0.079 0.921 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 -12.295 -4.295 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.107 4.107 6 H 0.125 0.875 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.101 4.101 10 H 0.082 0.918 11 C -0.009 4.009 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.142 4.142 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.500 -11.826 -4.221 15.745 hybrid contribution 0.662 0.075 0.381 0.768 sum -8.837 -11.751 -3.840 15.196 Atomic orbital electron populations 1.23213 0.77094 1.03290 1.02419 1.86544 1.22903 1.34101 1.84350 1.24084 0.92330 0.80973 0.71644 1.90654 1.67165 1.36388 1.45045 1.22105 0.85541 1.01432 1.01659 0.87501 1.22169 0.98640 0.99618 0.94345 1.22107 0.95723 0.96336 1.00417 1.22072 0.93200 0.98430 0.96376 0.91842 1.19146 0.96098 0.90042 0.95575 1.21278 0.99632 0.97267 1.37108 0.92568 1.25030 0.97709 0.95496 0.96302 1.69983 1.37184 1.01931 1.44448 0.86583 0.85008 0.78029 0.78655 1.19760 1.21116 1.21118 1.22635 0.98249 0.91574 1.01766 0.92037 0.92128 0.88408 0.91293 0.92099 0.92014 0.91074 0.96531 0.96375 0.93130 0.90285 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.78 10.57 -39.26 -0.41 -5.20 16 3 C 0.47 7.19 7.12 36.01 0.26 7.45 16 4 O -0.51 -9.20 15.47 -18.75 -0.29 -9.49 16 5 C -0.09 -1.31 3.36 -90.06 -0.30 -1.61 16 6 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 7 C -0.11 -1.61 6.37 -25.56 -0.16 -1.77 16 8 C -0.11 -1.94 5.87 -25.61 -0.15 -2.09 16 9 C -0.08 -1.65 2.84 -88.96 -0.25 -1.90 16 10 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.03 0.73 4.37 -27.88 -0.12 0.60 16 12 C -0.51 -14.30 8.67 -34.44 -0.30 -14.59 16 13 H 0.06 1.51 7.69 -52.48 -0.40 1.11 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.10 -1.86 5.37 -24.74 -0.13 -2.00 16 21 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 22 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.39 7.77 -51.93 -0.40 0.99 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.49 8.05 -51.93 -0.42 0.08 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 1.56 7.39 -51.93 -0.38 1.17 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 270.47 15.07 4.08 4.08 Total: -1.00 -31.33 270.47 -6.06 -37.40 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.95 Total: -4.02 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.20 Total: -13.02 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.70 Total: -14.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.33 -6.06 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261079310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.719 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds