Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99983 * 2 1 4 4 O 1.20824 * 120.00591 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99890 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.01398 * 301.38823 * 5 3 2 7 7 C 1.54259 * 110.07490 * 62.80271 * 5 3 2 8 8 C 1.55030 * 104.27933 * 142.82544 * 7 5 3 9 9 C 1.54887 * 102.68343 * 322.23592 * 8 7 5 10 10 H 1.09001 * 110.48637 * 279.02667 * 9 8 7 11 11 C 1.53006 * 110.48734 * 156.51776 * 9 8 7 12 12 C 1.50698 * 109.47184 * 68.23778 * 11 9 8 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.53873 * 110.03280 * 180.02562 * 5 3 2 21 21 H 1.09003 * 109.47005 * 59.99887 * 1 2 3 22 22 H 1.08994 * 109.47471 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46899 * 300.00727 * 1 2 3 24 24 H 1.08997 * 110.48809 * 261.59611 * 7 5 3 25 25 H 1.09002 * 110.48845 * 24.24481 * 7 5 3 26 26 H 1.09000 * 110.87748 * 203.89906 * 8 7 5 27 27 H 1.08998 * 110.69590 * 80.48923 * 8 7 5 28 28 H 1.09001 * 109.47002 * 308.24374 * 11 9 8 29 29 H 1.08993 * 109.46955 * 188.23936 * 11 9 8 30 30 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 31 31 H 1.09003 * 110.03576 * 121.37909 * 20 5 3 32 32 H 1.08998 * 110.03417 * 359.94386 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9672 0.7615 0.8735 7 6 4.1293 0.6415 -1.2896 8 6 5.3396 1.5372 -1.6588 9 6 4.8382 2.9554 -1.2896 10 1 4.2071 3.3556 -2.0831 11 6 6.0208 3.8896 -1.0254 12 6 6.7609 4.1399 -2.3140 13 1 6.4215 3.6791 -3.2300 14 6 7.8707 4.9579 -2.3239 15 7 8.2838 5.5194 -1.2088 16 14 8.7877 5.2687 -3.9214 17 1 9.9356 6.1752 -3.6650 18 1 7.8697 5.8976 -4.9049 19 1 9.2871 3.9799 -4.4644 20 6 4.0171 2.7461 0.0002 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 4.4544 -0.3817 -1.1015 25 1 3.3832 0.6658 -2.0839 26 1 5.5612 1.4710 -2.7240 27 1 6.2128 1.2692 -1.0641 28 1 6.6944 3.4278 -0.3034 29 1 5.6545 4.8357 -0.6271 30 1 7.8074 5.3583 -0.3793 31 1 4.6367 2.9464 0.8743 32 1 3.1474 3.4031 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261079311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -117.899468 kcal Electronic energy + Delta-G solvation = -14142.654520 eV Core-core repulsion = 11681.103244 eV Total energy + Delta-G solvation = -2461.551276 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.59760 -37.76562 -36.27015 -33.37477 -30.51514 -28.62232 -27.74164 -25.56570 -22.68272 -21.92936 -19.98314 -18.97414 -17.69923 -16.74656 -16.56360 -16.32042 -14.59433 -14.30782 -13.68498 -13.43600 -13.18030 -13.04986 -12.60319 -12.23067 -11.63576 -11.38801 -11.05865 -10.94680 -10.85087 -10.66240 -10.45481 -10.37233 -10.12191 -10.05097 -9.67098 -9.43338 -8.44548 -8.26962 -6.30013 -3.98322 2.27414 2.74225 3.46823 3.48867 3.67401 4.58804 4.70952 4.89745 4.96904 4.98623 5.06111 5.31015 5.46038 5.47104 5.74171 5.88920 5.91605 6.00341 6.10619 6.25629 6.37786 6.49883 6.60169 6.83061 6.91103 7.04321 7.45169 7.61390 7.80631 8.28957 8.52675 8.95049 9.73432 11.10518 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.069721 B = 0.006073 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.502075 B = 4609.819925 C = 4743.089457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.084 4.084 6 H 0.105 0.895 7 C -0.112 4.112 8 C -0.104 4.104 9 C -0.076 4.076 10 H 0.062 0.938 11 C 0.016 3.984 12 C -0.596 4.596 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 1.067 2.933 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.288 1.288 20 C -0.121 4.121 21 H 0.061 0.939 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.009 0.991 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.071 0.929 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 -11.782 2.051 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.104 4.104 6 H 0.123 0.877 7 C -0.150 4.150 8 C -0.142 4.142 9 C -0.095 4.095 10 H 0.081 0.919 11 C -0.021 4.021 12 C -0.634 4.634 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.552 5.552 16 Si 0.896 3.104 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.158 4.158 21 H 0.080 0.920 22 H 0.117 0.883 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.362 -10.678 1.398 14.944 hybrid contribution -1.658 -0.793 0.715 1.972 sum -12.020 -11.471 2.113 16.749 Atomic orbital electron populations 1.23228 0.76986 1.03364 1.02439 1.86536 1.22971 1.33896 1.84311 1.24053 0.92501 0.80972 0.71504 1.90628 1.67068 1.36355 1.45277 1.21819 0.85813 1.00851 1.01873 0.87702 1.22406 0.98766 0.99283 0.94544 1.22465 0.95840 0.94284 1.01606 1.21936 0.97173 0.95748 0.94606 0.91916 1.19265 0.91965 0.93507 0.97377 1.22040 1.14334 1.32359 0.94659 0.93349 1.25811 0.96030 0.93609 1.03577 1.70779 1.41760 1.42825 0.99867 0.83573 0.76195 0.76327 0.74355 1.20861 1.21543 1.21509 1.22452 1.00856 0.92011 1.00508 0.92017 0.88327 0.92099 0.90994 0.91804 0.91244 0.91313 0.97309 0.97530 0.92153 0.91077 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.72 10.55 -39.25 -0.41 -5.13 16 3 C 0.47 7.15 7.10 36.01 0.26 7.41 16 4 O -0.51 -9.11 14.96 -18.75 -0.28 -9.39 16 5 C -0.08 -1.26 3.41 -90.65 -0.31 -1.57 16 6 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 7 C -0.11 -1.63 6.34 -25.00 -0.16 -1.79 16 8 C -0.10 -1.89 5.94 -24.66 -0.15 -2.03 16 9 C -0.08 -1.58 2.82 -88.93 -0.25 -1.83 16 10 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 11 C 0.02 0.40 3.64 -27.88 -0.10 0.30 16 12 C -0.60 -16.90 8.71 -34.44 -0.30 -17.20 16 13 H 0.05 1.35 7.73 -52.48 -0.41 0.94 16 14 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 15 N -0.92 -28.32 13.65 55.43 0.76 -27.57 16 16 Si 1.07 25.51 29.90 -169.99 -5.08 20.42 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.12 -2.16 5.98 -25.59 -0.15 -2.31 16 21 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 22 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.92 7.85 -51.93 -0.41 0.51 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 28 H 0.01 0.23 7.93 -51.93 -0.41 -0.18 16 29 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 30 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 31 H 0.07 1.24 7.84 -51.93 -0.41 0.84 16 32 H 0.08 1.53 6.40 -51.93 -0.33 1.19 16 LS Contribution 268.28 15.07 4.04 4.04 Total: -1.00 -32.09 268.28 -6.02 -38.11 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.84 Total: -3.13 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -0.19 Total: -17.36 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.76 Total: -27.57 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.69 Total: -14.52 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.09 -6.02 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261079311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.789 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds