Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99983 * 2 1 4 4 O 1.20824 * 120.00591 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99890 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.01398 * 301.38823 * 5 3 2 7 7 C 1.54259 * 110.07490 * 62.80271 * 5 3 2 8 8 C 1.55030 * 104.27933 * 142.82544 * 7 5 3 9 9 C 1.54887 * 102.68343 * 322.23592 * 8 7 5 10 10 H 1.09001 * 110.48637 * 279.02667 * 9 8 7 11 11 C 1.53006 * 110.48734 * 156.51776 * 9 8 7 12 12 C 1.50698 * 109.47184 * 68.23778 * 11 9 8 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.53873 * 110.03280 * 180.02562 * 5 3 2 21 21 H 1.09003 * 109.47005 * 59.99887 * 1 2 3 22 22 H 1.08994 * 109.47471 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46899 * 300.00727 * 1 2 3 24 24 H 1.08997 * 110.48809 * 261.59611 * 7 5 3 25 25 H 1.09002 * 110.48845 * 24.24481 * 7 5 3 26 26 H 1.09000 * 110.87748 * 203.89906 * 8 7 5 27 27 H 1.08998 * 110.69590 * 80.48923 * 8 7 5 28 28 H 1.09001 * 109.47002 * 308.24374 * 11 9 8 29 29 H 1.08993 * 109.46955 * 188.23936 * 11 9 8 30 30 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 31 31 H 1.09003 * 110.03576 * 121.37909 * 20 5 3 32 32 H 1.08998 * 110.03417 * 359.94386 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9672 0.7615 0.8735 7 6 4.1293 0.6415 -1.2896 8 6 5.3396 1.5372 -1.6588 9 6 4.8382 2.9554 -1.2896 10 1 4.2071 3.3556 -2.0831 11 6 6.0208 3.8896 -1.0254 12 6 6.7609 4.1399 -2.3140 13 1 6.4215 3.6791 -3.2300 14 6 7.8707 4.9579 -2.3239 15 7 8.2838 5.5194 -1.2088 16 14 8.7877 5.2687 -3.9214 17 1 9.9356 6.1752 -3.6650 18 1 7.8697 5.8976 -4.9049 19 1 9.2871 3.9799 -4.4644 20 6 4.0171 2.7461 0.0002 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 4.4544 -0.3817 -1.1015 25 1 3.3832 0.6658 -2.0839 26 1 5.5612 1.4710 -2.7240 27 1 6.2128 1.2692 -1.0641 28 1 6.6944 3.4278 -0.3034 29 1 5.6545 4.8357 -0.6271 30 1 7.8074 5.3583 -0.3793 31 1 4.6367 2.9464 0.8743 32 1 3.1474 3.4031 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261079311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -136.891641 kcal Electronic energy + Delta-G solvation = -14143.478082 eV Core-core repulsion = 11681.103244 eV Total energy + Delta-G solvation = -2462.374838 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.77631 -39.15578 -37.47117 -35.45908 -32.23432 -29.97766 -28.83682 -27.29749 -24.62429 -23.26418 -21.35673 -20.45194 -19.05578 -18.66685 -17.76039 -17.42864 -16.00730 -15.71114 -15.51633 -14.94087 -14.65258 -14.46285 -14.13810 -13.56104 -13.12886 -13.00812 -12.62422 -12.48386 -12.28075 -12.05179 -11.91353 -11.83540 -11.71479 -11.44346 -11.29637 -11.28066 -10.56887 -10.49840 -8.64230 -6.33624 1.10037 1.53633 1.62265 1.70637 1.81201 2.59359 3.20000 3.44524 3.59935 3.78758 4.14525 4.29541 4.30471 4.38761 4.46626 4.51148 4.62859 4.68276 4.69991 4.89546 4.97731 5.05957 5.17184 5.22833 5.32631 5.35128 5.48740 5.64601 6.06585 6.23285 6.62900 6.67539 7.47821 8.76477 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.069721 B = 0.006073 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.502075 B = 4609.819925 C = 4743.089457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.540 6.540 5 C -0.080 4.080 6 H 0.135 0.865 7 C -0.098 4.098 8 C -0.102 4.102 9 C -0.077 4.077 10 H 0.047 0.953 11 C 0.018 3.982 12 C -0.607 4.607 13 H 0.051 0.949 14 C -0.042 4.042 15 N -0.942 5.942 16 Si 1.116 2.884 17 H -0.285 1.285 18 H -0.272 1.272 19 H -0.266 1.266 20 C -0.116 4.116 21 H 0.058 0.942 22 H 0.136 0.864 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.064 0.936 28 H -0.004 1.004 29 H -0.022 1.022 30 H 0.254 0.746 31 H 0.070 0.930 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.990 -13.948 1.319 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.316 3.684 4 O -0.430 6.430 5 C -0.099 4.099 6 H 0.153 0.847 7 C -0.135 4.135 8 C -0.139 4.139 9 C -0.096 4.096 10 H 0.065 0.935 11 C -0.019 4.019 12 C -0.645 4.645 13 H 0.069 0.931 14 C -0.239 4.239 15 N -0.580 5.580 16 Si 0.937 3.063 17 H -0.211 1.211 18 H -0.198 1.198 19 H -0.191 1.191 20 C -0.154 4.154 21 H 0.077 0.923 22 H 0.154 0.846 23 H 0.080 0.920 24 H 0.125 0.875 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.014 0.986 29 H -0.004 1.004 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.964 -12.883 0.674 16.931 hybrid contribution -1.552 -0.125 0.978 1.839 sum -12.516 -13.008 1.652 18.127 Atomic orbital electron populations 1.23576 0.74956 1.05835 1.02375 1.86513 1.24873 1.32255 1.83597 1.24004 0.92517 0.81153 0.70692 1.90626 1.67762 1.37617 1.47011 1.21753 0.86082 0.98538 1.03510 0.84685 1.22326 0.96885 1.00090 0.94198 1.22387 0.97349 0.93047 1.01160 1.21819 0.95465 0.96463 0.95827 0.93461 1.19195 0.93425 0.93277 0.95958 1.22443 1.14447 1.31929 0.95678 0.93050 1.27400 0.97289 0.93172 1.05990 1.70917 1.42437 1.44471 1.00146 0.82950 0.75221 0.77297 0.70787 1.21082 1.19780 1.19075 1.22289 0.99780 0.94539 0.98756 0.92334 0.84594 0.92032 0.87519 0.91438 0.91856 0.91715 0.98611 1.00404 0.93673 0.91133 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.24 10.55 -51.40 -0.54 -8.78 16 3 C 0.47 13.50 7.10 71.24 0.51 14.01 16 4 O -0.54 -19.03 14.96 21.97 0.33 -18.70 16 5 C -0.08 -2.20 3.41 -10.82 -0.04 -2.23 16 6 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 7 C -0.10 -2.54 6.34 31.72 0.20 -2.34 16 8 C -0.10 -3.55 5.94 31.93 0.19 -3.37 16 9 C -0.08 -3.24 2.82 -9.70 -0.03 -3.27 16 10 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 11 C 0.02 0.97 3.64 29.85 0.11 1.08 16 12 C -0.61 -34.96 8.71 25.60 0.22 -34.73 16 13 H 0.05 2.87 7.73 -2.91 -0.02 2.84 16 14 C -0.04 -2.46 5.46 84.65 0.46 -1.99 16 15 N -0.94 -59.56 13.65 21.45 0.29 -59.26 16 16 Si 1.12 50.89 29.90 68.60 2.05 52.95 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 20 C -0.12 -4.14 5.98 31.34 0.19 -3.95 16 21 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 22 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.07 1.74 7.85 -2.39 -0.02 1.72 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 27 H 0.06 2.30 8.00 -2.39 -0.02 2.28 16 28 H 0.00 -0.24 7.93 -2.39 -0.02 -0.26 16 29 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 30 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 31 H 0.07 2.49 7.84 -2.39 -0.02 2.47 16 32 H 0.07 2.57 6.40 -2.39 -0.02 2.55 16 Total: -1.00 -70.39 268.28 6.32 -64.06 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.18 Total: 4.90 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.01 Total: -35.17 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.29 Total: -59.26 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.21 Total: -27.48 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.95 kcal Total: -70.39 6.32 -64.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261079311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.828 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds