Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.01604 * 2 1 4 4 C 1.54262 * 110.03655 * 238.60624 * 2 1 3 5 5 C 1.54887 * 104.19721 * 264.32701 * 4 2 1 6 6 H 1.09002 * 110.75635 * 80.37272 * 5 4 2 7 7 C 1.53001 * 110.75625 * 203.73986 * 5 4 2 8 8 C 1.50698 * 109.47144 * 185.00120 * 7 5 4 9 9 H 1.07996 * 120.00054 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00214 * 179.97438 * 8 7 5 11 11 N 1.31518 * 120.00387 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99767 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47155 * 90.00068 * 12 10 8 14 14 H 1.48502 * 109.47400 * 209.99732 * 12 10 8 15 15 H 1.48495 * 109.47257 * 329.99625 * 12 10 8 16 16 C 1.54889 * 102.74775 * 322.05613 * 5 4 2 17 17 C 1.53882 * 110.03430 * 121.38832 * 2 1 3 18 18 H 1.09006 * 110.02692 * 0.02562 * 17 2 1 19 19 C 1.50694 * 110.03194 * 238.57285 * 17 2 1 20 20 O 1.20823 * 120.00367 * 359.97438 * 19 17 2 21 21 O 1.34233 * 119.99711 * 180.02562 * 19 17 2 22 22 H 1.09002 * 109.47153 * 179.29939 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.30130 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.30111 * 1 2 3 25 25 H 1.09006 * 110.48370 * 23.00554 * 4 2 1 26 26 H 1.08997 * 110.48973 * 145.51172 * 4 2 1 27 27 H 1.09001 * 109.47027 * 304.99889 * 7 5 4 28 28 H 1.08995 * 109.46955 * 64.99906 * 7 5 4 29 29 H 0.96997 * 120.00081 * 180.02562 * 11 10 8 30 30 H 1.08999 * 110.48540 * 156.62068 * 16 5 4 31 31 H 1.09005 * 110.48219 * 279.26032 * 16 5 4 32 32 H 0.96701 * 117.00030 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 -1.2371 5 6 2.3281 -2.1898 -0.7200 6 1 1.4031 -2.7649 -0.6763 7 6 3.3661 -2.8954 -1.5949 8 6 3.5159 -4.3251 -1.1427 9 1 2.9297 -4.6935 -0.3139 10 6 4.4013 -5.1629 -1.7871 11 7 4.5324 -6.4105 -1.3921 12 14 5.4157 -4.5255 -3.2203 13 1 6.6961 -3.9704 -2.7123 14 1 5.6979 -5.6392 -4.1612 15 1 4.6599 -3.4602 -3.9267 16 6 2.8874 -1.9409 0.7028 17 6 2.0571 -0.7530 1.2341 18 1 1.2229 -1.1188 1.8328 19 6 2.9275 0.1575 2.0614 20 8 3.1157 1.2978 1.7092 21 8 3.4946 -0.2988 3.1893 22 1 -0.3633 -1.0276 -0.0126 23 1 -0.3633 0.5247 -0.8837 24 1 -0.3634 0.5030 0.8962 25 1 1.3062 -0.7687 -2.0258 26 1 2.9799 -0.2980 -1.5981 27 1 3.0389 -2.8756 -2.6345 28 1 4.3244 -2.3839 -1.5058 29 1 5.1556 -6.9997 -1.8452 30 1 2.7401 -2.8202 1.3298 31 1 3.9440 -1.6769 0.6565 32 1 4.0449 0.3220 3.6862 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306170739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = -143.888889 kcal Electronic energy + Delta-G solvation = -14376.029033 eV Core-core repulsion = 11913.350772 eV Total energy + Delta-G solvation = -2462.678262 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.62010 -39.22554 -37.09698 -35.22142 -33.12971 -31.18264 -29.01642 -26.27445 -24.56620 -22.98237 -20.89695 -20.11176 -19.06599 -18.78082 -17.79526 -16.77129 -16.43148 -15.94208 -15.21424 -14.64413 -14.47113 -14.15251 -13.99917 -13.61176 -13.26732 -12.94818 -12.61114 -12.55813 -12.24244 -12.01268 -11.86527 -11.76894 -11.65140 -11.50961 -11.19870 -11.07318 -10.86663 -10.72031 -8.25115 -6.26977 1.18469 1.36233 1.37808 1.49339 2.16323 2.38204 3.10286 3.49672 3.68492 3.95647 4.38677 4.41382 4.46755 4.49608 4.55739 4.72361 4.75693 4.99872 5.03896 5.13321 5.17385 5.20493 5.28787 5.34668 5.46776 5.52202 5.63911 5.70779 5.75870 6.34639 6.80891 7.00571 7.36999 8.91367 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.036098 B = 0.008223 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.487331 B = 3404.309988 C = 3672.988458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.084 0.916 4 C -0.115 4.115 5 C -0.073 4.073 6 H 0.071 0.929 7 C -0.006 4.006 8 C -0.518 4.518 9 H 0.039 0.961 10 C 0.003 3.997 11 N -0.952 5.952 12 Si 0.943 3.057 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.247 1.247 16 C -0.091 4.091 17 C -0.083 4.083 18 H 0.128 0.872 19 C 0.492 3.508 20 O -0.546 6.546 21 O -0.511 6.511 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.020 0.980 28 H 0.011 0.989 29 H 0.264 0.736 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 14.023 4.580 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.152 4.152 5 C -0.092 4.092 6 H 0.089 0.911 7 C -0.043 4.043 8 C -0.556 4.556 9 H 0.057 0.943 10 C -0.194 4.194 11 N -0.593 5.593 12 Si 0.767 3.233 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.170 1.170 16 C -0.128 4.128 17 C -0.102 4.102 18 H 0.146 0.854 19 C 0.337 3.663 20 O -0.437 6.437 21 O -0.325 6.325 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -5.752 13.909 4.247 15.639 hybrid contribution 1.196 -0.019 -0.083 1.199 sum -4.556 13.891 4.163 15.200 Atomic orbital electron populations 1.21857 0.92595 1.02504 1.02642 1.21774 0.97435 0.99554 0.91848 0.89778 1.22530 1.00943 0.94321 0.97402 1.21930 0.98241 0.95146 0.93870 0.91092 1.19555 0.95006 0.93829 0.95926 1.21475 1.22208 0.95860 1.16032 0.94291 1.25958 0.98328 0.94899 1.00177 1.70064 1.38571 1.07079 1.43635 0.85765 0.79407 0.78555 0.79586 1.19698 1.21155 1.17040 1.22171 0.98144 0.95594 0.96926 1.21915 0.97674 0.94584 0.95987 0.85416 1.23611 0.77355 0.86493 0.78888 1.90643 1.60752 1.21565 1.70742 1.84560 1.62157 1.49510 1.36233 0.92073 0.91236 0.91852 0.90082 0.92450 0.96198 0.97027 0.92734 0.91553 0.92954 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.83 71.98 0.64 -2.21 16 2 C -0.09 -2.28 3.10 -10.07 -0.03 -2.31 16 3 H 0.08 2.34 6.40 -2.38 -0.02 2.33 16 4 C -0.11 -3.41 5.81 31.67 0.18 -3.23 16 5 C -0.07 -2.70 2.82 -9.50 -0.03 -2.73 16 6 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 7 C -0.01 -0.27 3.54 29.85 0.11 -0.16 16 8 C -0.52 -29.23 9.37 25.60 0.24 -28.99 16 9 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 10 C 0.00 0.15 5.47 84.65 0.46 0.62 16 11 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 12 Si 0.94 44.57 27.47 68.60 1.88 46.46 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 15 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 16 C -0.09 -3.13 5.50 31.70 0.17 -2.96 16 17 C -0.08 -2.25 3.07 -10.78 -0.03 -2.28 16 18 H 0.13 2.93 7.67 -2.38 -0.02 2.91 16 19 C 0.49 13.58 7.47 71.23 0.53 14.11 16 20 O -0.55 -17.41 15.97 21.97 0.35 -17.06 16 21 O -0.51 -11.66 13.41 -51.45 -0.69 -12.35 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.08 2.16 7.84 -2.38 -0.02 2.14 16 26 H 0.06 1.78 8.05 -2.39 -0.02 1.76 16 27 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 28 H 0.01 0.53 7.41 -2.39 -0.02 0.51 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.94 7.64 -2.38 -0.02 1.92 16 32 H 0.43 5.60 9.10 -74.06 -0.67 4.93 16 Total: -1.00 -68.38 264.87 4.46 -63.92 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.37 Total: 8.57 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 2.24 Total: -30.14 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.30 Total: -59.40 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.34 Total: -29.40 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -68.38 4.46 -63.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306170739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.974 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds