Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00449 * 2 1 4 4 H 1.09001 * 112.94292 * 338.10108 * 3 2 1 5 5 C 1.53950 * 113.66165 * 109.49881 * 3 2 1 6 6 C 1.53952 * 87.37851 * 89.78379 * 5 3 2 7 7 O 1.42901 * 113.65857 * 270.22025 * 6 5 3 8 8 C 1.50698 * 113.66190 * 139.25644 * 6 5 3 9 9 H 1.07993 * 120.00006 * 259.50154 * 8 6 5 10 10 C 1.37881 * 119.99900 * 79.50429 * 8 6 5 11 11 N 1.31511 * 120.00158 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99853 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47189 * 60.00000 * 12 10 8 14 14 H 1.48499 * 109.47234 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47205 * 300.00064 * 12 10 8 16 16 C 1.52909 * 86.78252 * 24.68886 * 6 5 3 17 17 C 1.52907 * 121.13536 * 209.38099 * 16 6 5 18 18 C 1.53958 * 86.78205 * 209.38733 * 17 16 6 19 19 C 1.52915 * 121.13447 * 100.82251 * 16 6 5 20 20 H 1.09000 * 109.47636 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47531 * 300.00130 * 1 2 3 22 22 H 1.09008 * 109.46658 * 60.00254 * 1 2 3 23 23 H 1.09002 * 113.58302 * 335.13980 * 5 3 2 24 24 H 1.09004 * 113.57731 * 204.42153 * 5 3 2 25 25 H 0.96699 * 113.99744 * 280.49091 * 7 6 5 26 26 H 0.96999 * 120.00615 * 180.02562 * 11 10 8 27 27 H 1.08994 * 113.66316 * 323.85618 * 17 16 6 28 28 H 1.08997 * 113.66044 * 94.91866 * 17 16 6 29 29 H 1.09000 * 113.57861 * 270.13288 * 18 17 16 30 30 H 1.08990 * 113.65166 * 139.34938 * 18 17 16 31 31 H 1.09004 * 113.66330 * 265.09006 * 19 16 6 32 32 H 1.09001 * 113.65876 * 36.13855 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3323 2.0725 -0.3744 5 6 2.6916 1.6784 1.3292 6 6 3.9833 1.0664 0.7573 7 8 4.1302 -0.3273 1.0368 8 6 5.2226 1.8621 1.0767 9 1 5.6490 2.5191 0.3332 10 6 5.8121 1.7513 2.3182 11 7 5.2931 0.9507 3.2234 12 14 7.3486 2.7370 2.7139 13 1 7.0535 4.1867 2.5850 14 1 7.7825 2.4413 4.1030 15 1 8.4318 2.3664 1.7681 16 6 3.4051 1.3568 -0.6282 17 6 3.7633 0.4857 -1.8328 18 6 3.5486 1.7425 -2.6957 19 6 3.8621 2.5714 -1.4369 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 2.2961 1.1373 2.1888 24 1 2.7565 2.7531 1.4994 25 1 4.4479 -0.5179 1.9300 26 1 5.7076 0.8730 4.0970 27 1 4.7940 0.1312 -1.8253 28 1 3.0423 -0.3078 -2.0287 29 1 2.5243 1.8583 -3.0500 30 1 4.2863 1.8592 -3.4895 31 1 3.2200 3.4440 -1.3165 32 1 4.9206 2.8031 -1.3180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306364532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -45.774797 kcal Electronic energy + Delta-G solvation = -15177.964830 eV Core-core repulsion = 12719.541114 eV Total energy + Delta-G solvation = -2458.423715 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77760 -36.33319 -34.99333 -31.99956 -31.58791 -26.74414 -25.66449 -24.81704 -23.67908 -22.07609 -19.84297 -17.56607 -16.82122 -15.50025 -15.25045 -14.96139 -14.50800 -14.25613 -13.84099 -13.21624 -12.69949 -11.85027 -11.67832 -11.59128 -11.42213 -11.15558 -10.96896 -10.78722 -10.63013 -10.47779 -10.13702 -9.88426 -9.69832 -9.40188 -8.90374 -8.54091 -8.22095 -7.78266 -6.11013 -4.18819 3.27372 3.32631 3.35005 4.28394 4.36393 5.10519 5.29105 5.43714 5.51968 5.61020 5.61809 5.83677 5.85892 5.95658 5.98153 6.15615 6.25369 6.48572 6.58758 6.64306 6.70472 6.86313 6.94272 7.16746 7.23445 7.31088 7.75757 7.91455 8.03412 8.25355 8.82504 9.50126 9.80171 10.95142 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.035359 B = 0.012153 C = 0.010193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.685184 B = 2303.325254 C = 2746.354811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.084 3.916 4 H 0.050 0.950 5 C -0.172 4.172 6 C 0.268 3.732 7 O -0.567 6.567 8 C -0.528 4.528 9 H 0.066 0.934 10 C 0.069 3.931 11 N -0.900 5.900 12 Si 0.896 3.104 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.093 4.093 17 C -0.107 4.107 18 C -0.149 4.149 19 C -0.098 4.098 20 H 0.078 0.922 21 H 0.034 0.966 22 H 0.031 0.969 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.383 0.617 26 H 0.267 0.733 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 1.654 -6.003 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.026 3.974 4 H 0.068 0.932 5 C -0.211 4.211 6 C 0.227 3.773 7 O -0.377 6.377 8 C -0.566 4.566 9 H 0.084 0.916 10 C -0.132 4.132 11 N -0.540 5.540 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.094 4.094 17 C -0.144 4.144 18 C -0.186 4.186 19 C -0.135 4.135 20 H 0.096 0.904 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.235 0.765 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.708 1.360 -6.421 8.698 hybrid contribution 0.688 0.879 1.029 1.518 sum -5.020 2.238 -5.392 7.699 Atomic orbital electron populations 1.22690 0.83068 1.01733 0.99015 1.88009 1.17434 1.26847 1.94504 1.22915 0.92421 0.83555 0.98526 0.93160 1.24131 1.01089 1.00493 0.95361 1.18921 0.90289 0.80309 0.87730 1.86066 1.89299 1.23918 1.38377 1.21623 1.11321 1.25098 0.98572 0.91632 1.25034 0.97140 0.95084 0.95981 1.69498 1.40565 1.38122 1.05844 0.86597 0.83255 0.80407 0.77374 1.20202 1.21234 1.20138 1.22795 0.94478 0.96839 0.95250 1.22342 1.01421 0.95581 0.95062 1.22961 1.00231 0.98731 0.96690 1.22503 1.01947 0.95180 0.93867 0.90366 0.94718 0.95062 0.92318 0.90637 0.76490 0.92276 0.90280 0.92087 0.91478 0.92402 0.92564 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.86 101.05 1.10 1.60 16 2 O -0.35 -7.39 9.87 -36.54 -0.36 -7.75 16 3 C 0.08 1.76 4.16 -26.20 -0.11 1.66 16 4 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 5 C -0.17 -4.12 7.30 -25.75 -0.19 -4.30 16 6 C 0.27 6.89 1.20 -91.32 -0.11 6.78 16 7 O -0.57 -15.73 12.85 -36.54 -0.47 -16.20 16 8 C -0.53 -14.26 8.29 -34.44 -0.29 -14.55 16 9 H 0.07 1.72 5.85 -52.49 -0.31 1.41 16 10 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 11 N -0.90 -24.91 11.29 55.43 0.63 -24.28 16 12 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.09 -2.04 0.83 -154.63 -0.13 -2.17 16 17 C -0.11 -2.16 7.50 -26.28 -0.20 -2.36 16 18 C -0.15 -2.51 8.08 -25.75 -0.21 -2.72 16 19 C -0.10 -1.86 7.20 -26.28 -0.19 -2.05 16 20 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 23 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 24 H 0.08 1.77 8.09 -51.93 -0.42 1.35 16 25 H 0.38 10.88 6.73 45.56 0.31 11.19 16 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.06 1.24 7.83 -51.93 -0.41 0.83 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.85 6.40 -51.93 -0.33 1.52 16 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -28.99 261.94 -5.78 -34.77 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.09 Total: 10.00 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -0.41 Total: -16.35 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.63 Total: -24.28 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.83 Total: -23.95 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.99 -5.78 -34.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.006 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds