Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00449 * 2 1 4 4 H 1.09001 * 112.94292 * 338.10108 * 3 2 1 5 5 C 1.53950 * 113.66165 * 109.49881 * 3 2 1 6 6 C 1.53952 * 87.37851 * 89.78379 * 5 3 2 7 7 O 1.42901 * 113.65857 * 270.22025 * 6 5 3 8 8 C 1.50698 * 113.66190 * 139.25644 * 6 5 3 9 9 H 1.07993 * 120.00006 * 259.50154 * 8 6 5 10 10 C 1.37881 * 119.99900 * 79.50429 * 8 6 5 11 11 N 1.31511 * 120.00158 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99853 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47189 * 60.00000 * 12 10 8 14 14 H 1.48499 * 109.47234 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47205 * 300.00064 * 12 10 8 16 16 C 1.52909 * 86.78252 * 24.68886 * 6 5 3 17 17 C 1.52907 * 121.13536 * 209.38099 * 16 6 5 18 18 C 1.53958 * 86.78205 * 209.38733 * 17 16 6 19 19 C 1.52915 * 121.13447 * 100.82251 * 16 6 5 20 20 H 1.09000 * 109.47636 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47531 * 300.00130 * 1 2 3 22 22 H 1.09008 * 109.46658 * 60.00254 * 1 2 3 23 23 H 1.09002 * 113.58302 * 335.13980 * 5 3 2 24 24 H 1.09004 * 113.57731 * 204.42153 * 5 3 2 25 25 H 0.96699 * 113.99744 * 280.49091 * 7 6 5 26 26 H 0.96999 * 120.00615 * 180.02562 * 11 10 8 27 27 H 1.08994 * 113.66316 * 323.85618 * 17 16 6 28 28 H 1.08997 * 113.66044 * 94.91866 * 17 16 6 29 29 H 1.09000 * 113.57861 * 270.13288 * 18 17 16 30 30 H 1.08990 * 113.65166 * 139.34938 * 18 17 16 31 31 H 1.09004 * 113.66330 * 265.09006 * 19 16 6 32 32 H 1.09001 * 113.65876 * 36.13855 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3323 2.0725 -0.3744 5 6 2.6916 1.6784 1.3292 6 6 3.9833 1.0664 0.7573 7 8 4.1302 -0.3273 1.0368 8 6 5.2226 1.8621 1.0767 9 1 5.6490 2.5191 0.3332 10 6 5.8121 1.7513 2.3182 11 7 5.2931 0.9507 3.2234 12 14 7.3486 2.7370 2.7139 13 1 7.0535 4.1867 2.5850 14 1 7.7825 2.4413 4.1030 15 1 8.4318 2.3664 1.7681 16 6 3.4051 1.3568 -0.6282 17 6 3.7633 0.4857 -1.8328 18 6 3.5486 1.7425 -2.6957 19 6 3.8621 2.5714 -1.4369 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 2.2961 1.1373 2.1888 24 1 2.7565 2.7531 1.4994 25 1 4.4479 -0.5179 1.9300 26 1 5.7076 0.8730 4.0970 27 1 4.7940 0.1312 -1.8253 28 1 3.0423 -0.3078 -2.0287 29 1 2.5243 1.8583 -3.0500 30 1 4.2863 1.8592 -3.4895 31 1 3.2200 3.4440 -1.3165 32 1 4.9206 2.8031 -1.3180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306364532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -65.691926 kcal Electronic energy + Delta-G solvation = -15178.828501 eV Core-core repulsion = 12719.541114 eV Total energy + Delta-G solvation = -2459.287387 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45384 -37.84397 -36.87708 -34.05582 -33.43931 -28.50529 -27.23141 -26.35495 -25.29573 -23.88529 -21.51260 -19.34529 -18.71359 -17.18852 -17.07137 -16.52737 -16.27666 -15.86281 -15.49982 -14.75687 -14.57552 -13.59679 -13.36930 -13.29132 -13.09480 -12.85523 -12.58138 -12.52801 -12.36454 -12.10441 -11.93310 -11.70582 -11.31732 -10.96758 -10.79484 -10.33945 -9.99365 -9.76126 -8.14653 -6.29965 1.41768 1.43266 1.50607 2.41053 2.80700 3.08171 3.61918 3.90297 4.00789 4.04965 4.15236 4.40005 4.50978 4.59298 4.61226 4.71884 4.82820 4.89131 4.92829 5.05624 5.16316 5.17614 5.25879 5.38642 5.52263 5.62922 5.83043 5.96063 6.22471 6.53515 6.76709 7.41958 7.63400 8.89864 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.035359 B = 0.012153 C = 0.010193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.685184 B = 2303.325254 C = 2746.354811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.382 6.382 3 C 0.100 3.900 4 H 0.083 0.917 5 C -0.173 4.173 6 C 0.239 3.761 7 O -0.580 6.580 8 C -0.545 4.545 9 H 0.068 0.932 10 C 0.020 3.980 11 N -0.925 5.925 12 Si 0.959 3.041 13 H -0.268 1.268 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.097 4.097 20 H 0.095 0.905 21 H 0.039 0.961 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.373 0.627 26 H 0.267 0.733 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 2.895 -7.584 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.301 6.301 3 C 0.042 3.958 4 H 0.101 0.899 5 C -0.212 4.212 6 C 0.199 3.801 7 O -0.389 6.389 8 C -0.583 4.583 9 H 0.086 0.914 10 C -0.178 4.178 11 N -0.566 5.566 12 Si 0.784 3.216 13 H -0.193 1.193 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.105 4.105 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.134 4.134 20 H 0.114 0.886 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.223 0.777 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.360 2.607 -8.020 10.563 hybrid contribution 0.844 0.431 1.555 1.821 sum -5.516 3.037 -6.466 9.025 Atomic orbital electron populations 1.22974 0.80287 1.03503 1.00460 1.87966 1.20591 1.27009 1.94516 1.22713 0.92755 0.84453 0.95840 0.89942 1.24054 1.01139 0.99880 0.96126 1.19350 0.90651 0.79063 0.91079 1.86062 1.89346 1.25872 1.37640 1.21964 1.12158 1.25347 0.98829 0.91354 1.25800 0.99956 0.96118 0.95931 1.69609 1.41755 1.39232 1.06049 0.85609 0.79688 0.79313 0.76985 1.19284 1.21103 1.19919 1.22977 0.94561 0.99115 0.93830 1.22328 1.00087 0.96892 0.95807 1.22848 1.02303 0.94797 0.95925 1.22512 1.01489 0.95143 0.94303 0.88620 0.94251 0.92482 0.94969 0.90706 0.77660 0.92349 0.92277 0.92489 0.89044 0.90170 0.90591 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 10.86 113.37 1.23 1.92 16 2 O -0.38 -15.67 9.87 -147.73 -1.46 -17.13 16 3 C 0.10 4.07 4.16 30.94 0.13 4.20 16 4 H 0.08 2.80 7.90 -2.39 -0.02 2.78 16 5 C -0.17 -8.35 7.30 31.23 0.23 -8.12 16 6 C 0.24 12.41 1.20 -11.25 -0.01 12.39 16 7 O -0.58 -33.28 12.85 -147.73 -1.90 -35.18 16 8 C -0.55 -29.72 8.29 25.60 0.21 -29.50 16 9 H 0.07 3.58 5.85 -2.91 -0.02 3.57 16 10 C 0.02 1.12 5.40 84.66 0.46 1.57 16 11 N -0.92 -52.45 11.29 21.45 0.24 -52.21 16 12 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 C -0.10 -4.46 0.83 -52.26 -0.04 -4.50 16 17 C -0.11 -4.46 7.50 30.89 0.23 -4.23 16 18 C -0.12 -3.66 8.08 31.23 0.25 -3.40 16 19 C -0.10 -3.45 7.20 30.89 0.22 -3.23 16 20 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 21 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 22 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 3.51 8.09 -2.38 -0.02 3.49 16 25 H 0.37 22.19 6.73 -74.06 -0.50 21.69 16 26 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.06 2.24 7.83 -2.39 -0.02 2.22 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.08 3.04 6.40 -2.39 -0.02 3.03 16 Total: -1.00 -62.88 261.94 2.43 -60.45 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.61 Total: 31.90 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 2.91 Total: -32.90 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.24 Total: -52.21 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -3.36 Total: -52.31 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -62.88 2.43 -60.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.239 kcal (2) G-P(sol) polarization free energy of solvation -62.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds