Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00325 * 2 1 4 4 H 1.08995 * 112.88073 * 338.16041 * 3 2 1 5 5 C 1.53952 * 113.66299 * 109.50223 * 3 2 1 6 6 C 1.53950 * 87.29486 * 89.73735 * 5 3 2 7 7 O 1.42902 * 113.65820 * 139.29808 * 6 5 3 8 8 C 1.50695 * 113.66467 * 270.26433 * 6 5 3 9 9 H 1.07999 * 120.00296 * 120.02308 * 8 6 5 10 10 C 1.37880 * 120.00225 * 300.02054 * 8 6 5 11 11 N 1.31513 * 120.00332 * 167.32316 * 10 8 6 12 12 Si 1.86801 * 119.99549 * 347.04451 * 10 8 6 13 13 H 1.48500 * 109.47248 * 180.27353 * 12 10 8 14 14 H 1.48500 * 109.47435 * 300.27694 * 12 10 8 15 15 H 1.48502 * 109.47161 * 60.27914 * 12 10 8 16 16 C 1.52906 * 86.78120 * 24.73650 * 6 5 3 17 17 C 1.52907 * 121.14206 * 209.37578 * 16 6 5 18 18 C 1.53951 * 86.78575 * 209.37433 * 17 16 6 19 19 C 1.52909 * 121.14298 * 100.81175 * 16 6 5 20 20 H 1.09006 * 109.47292 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47548 * 299.99967 * 1 2 3 22 22 H 1.09006 * 109.46704 * 60.00279 * 1 2 3 23 23 H 1.09000 * 113.58033 * 335.13688 * 5 3 2 24 24 H 1.08997 * 113.58128 * 204.34440 * 5 3 2 25 25 H 0.96697 * 114.00308 * 65.58665 * 7 6 5 26 26 H 0.97001 * 119.99863 * 355.12247 * 11 10 8 27 27 H 1.08999 * 113.66341 * 323.85241 * 17 16 6 28 28 H 1.09011 * 113.66208 * 94.90609 * 17 16 6 29 29 H 1.08995 * 113.58181 * 270.13499 * 18 17 16 30 30 H 1.08999 * 113.57645 * 139.33593 * 18 17 16 31 31 H 1.08996 * 113.66467 * 265.10310 * 19 16 6 32 32 H 1.09009 * 113.65899 * 36.15314 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3311 2.0717 -0.3736 5 6 2.6916 1.6784 1.3292 6 6 3.9819 1.0649 0.7557 7 8 5.1584 1.8175 1.0581 8 6 4.1350 -0.4053 1.0493 9 1 4.2073 -1.1135 0.2372 10 6 4.1828 -0.8463 2.3548 11 7 4.0652 -2.1289 2.6204 12 14 4.4226 0.3774 3.7457 13 1 4.4451 -0.3456 5.0427 14 1 5.7085 1.0957 3.5570 15 1 3.3046 1.3548 3.7434 16 6 3.4030 1.3571 -0.6290 17 6 3.7588 0.4866 -1.8347 18 6 3.5448 1.7442 -2.6964 19 6 3.8608 2.5717 -1.4373 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 2.2962 1.1373 2.1888 24 1 2.7577 2.7531 1.4988 25 1 5.3781 1.8428 1.9995 26 1 3.8742 -2.7566 1.9059 27 1 4.7890 0.1305 -1.8284 28 1 3.0364 -0.3060 -2.0305 29 1 2.5204 1.8617 -3.0496 30 1 4.2827 1.8594 -3.4904 31 1 3.2201 3.4450 -1.3155 32 1 4.9198 2.8017 -1.3193 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306364554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -37.036760 kcal Electronic energy + Delta-G solvation = -15375.157151 eV Core-core repulsion = 12917.112345 eV Total energy + Delta-G solvation = -2458.044806 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03611 -36.35506 -35.39430 -32.50645 -31.84611 -26.29295 -25.93904 -24.55675 -24.07385 -21.96670 -20.09761 -17.82737 -17.15748 -16.14441 -15.26536 -15.20314 -14.77700 -14.20330 -13.50609 -13.42550 -12.98860 -12.49482 -11.87637 -11.67458 -11.55050 -11.33411 -11.15076 -10.86342 -10.57089 -10.16659 -9.99833 -9.86594 -9.62864 -9.37315 -8.91352 -8.55955 -8.39383 -8.13741 -6.38597 -4.05836 3.28260 3.33420 3.52791 4.25700 4.45731 5.12480 5.18350 5.28784 5.38220 5.46752 5.51297 5.69666 5.82238 5.88646 5.93534 6.01958 6.06248 6.11246 6.32154 6.38284 6.46057 6.51764 6.76864 6.85044 6.95642 7.06074 7.47479 7.95035 8.09988 8.44868 8.95497 8.97608 9.65369 10.97029 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.029426 B = 0.015527 C = 0.012934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.304949 B = 1802.829346 C = 2164.342043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.334 6.334 3 C 0.104 3.896 4 H 0.057 0.943 5 C -0.205 4.205 6 C 0.224 3.776 7 O -0.584 6.584 8 C -0.568 4.568 9 H 0.067 0.933 10 C 0.034 3.966 11 N -0.903 5.903 12 Si 1.034 2.966 13 H -0.285 1.285 14 H -0.282 1.282 15 H -0.271 1.271 16 C -0.082 4.082 17 C -0.105 4.105 18 C -0.147 4.147 19 C -0.105 4.105 20 H 0.080 0.920 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.352 0.648 26 H 0.270 0.730 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 8.064 -5.156 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.251 6.251 3 C 0.046 3.954 4 H 0.075 0.925 5 C -0.244 4.244 6 C 0.185 3.815 7 O -0.394 6.394 8 C -0.606 4.606 9 H 0.085 0.915 10 C -0.172 4.172 11 N -0.537 5.537 12 Si 0.864 3.136 13 H -0.211 1.211 14 H -0.209 1.209 15 H -0.197 1.197 16 C -0.082 4.082 17 C -0.143 4.143 18 C -0.185 4.185 19 C -0.142 4.142 20 H 0.098 0.902 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.201 0.799 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.553 8.078 -4.161 10.163 hybrid contribution -0.551 -0.028 -0.969 1.115 sum -5.104 8.050 -5.130 10.824 Atomic orbital electron populations 1.22727 0.83271 1.01988 0.98779 1.88176 1.17139 1.25588 1.94224 1.22218 0.92103 0.84458 0.96651 0.92531 1.24595 1.02241 0.99317 0.98201 1.20276 0.79805 0.90966 0.90468 1.86420 1.48441 1.75879 1.28628 1.21884 1.54091 0.89928 0.94684 0.91524 1.25634 0.93288 0.99060 0.99190 1.70782 1.44066 1.02581 1.36293 0.84400 0.76746 0.75658 0.76797 1.21143 1.20934 1.19699 1.22676 0.94504 0.96687 0.94377 1.22403 1.01614 0.95732 0.94514 1.22939 1.00430 0.98525 0.96569 1.22483 1.01669 0.95353 0.94744 0.90190 0.94755 0.95168 0.90598 0.91450 0.79856 0.92001 0.90280 0.91638 0.91242 0.92272 0.92644 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.86 101.05 1.10 1.59 16 2 O -0.33 -7.31 9.34 -35.23 -0.33 -7.64 16 3 C 0.10 2.15 4.15 -26.28 -0.11 2.04 16 4 H 0.06 1.01 7.90 -51.93 -0.41 0.60 16 5 C -0.21 -4.58 5.91 -25.75 -0.15 -4.73 16 6 C 0.22 5.50 1.06 -91.33 -0.10 5.40 16 7 O -0.58 -14.23 12.71 -35.23 -0.45 -14.68 16 8 C -0.57 -16.15 7.82 -34.44 -0.27 -16.42 16 9 H 0.07 2.07 7.42 -52.49 -0.39 1.68 16 10 C 0.03 0.97 5.32 -17.82 -0.09 0.88 16 11 N -0.90 -27.81 13.70 55.43 0.76 -27.05 16 12 Si 1.03 24.72 24.79 -169.99 -4.21 20.51 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.20 6.06 56.52 0.34 -5.85 16 15 H -0.27 -5.99 5.65 56.52 0.32 -5.67 16 16 C -0.08 -1.75 0.79 -154.72 -0.12 -1.87 16 17 C -0.11 -2.13 6.71 -26.28 -0.18 -2.31 16 18 C -0.15 -2.42 8.08 -25.75 -0.21 -2.63 16 19 C -0.11 -1.89 7.47 -26.28 -0.20 -2.09 16 20 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 1.81 5.70 -51.93 -0.30 1.51 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.35 8.06 5.03 45.56 0.23 8.29 16 26 H 0.27 8.36 8.73 -40.82 -0.36 8.01 16 27 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 28 H 0.06 1.36 7.83 -51.92 -0.41 0.95 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 LS Contribution 253.08 15.07 3.81 3.81 Total: -1.00 -31.20 253.08 -5.10 -36.30 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.36 Total: 8.89 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -0.33 Total: -20.14 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.76 Total: -27.05 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.78 Total: -22.32 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.21 Total: 20.51 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.20 -5.10 -36.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.738 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds