Wall clock time and date at job start Mon Mar 30 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00325 * 2 1 4 4 H 1.08995 * 112.88073 * 338.16041 * 3 2 1 5 5 C 1.53952 * 113.66299 * 109.50223 * 3 2 1 6 6 C 1.53950 * 87.29486 * 89.73735 * 5 3 2 7 7 O 1.42902 * 113.65820 * 139.29808 * 6 5 3 8 8 C 1.50695 * 113.66467 * 270.26433 * 6 5 3 9 9 H 1.07999 * 120.00296 * 120.02308 * 8 6 5 10 10 C 1.37880 * 120.00225 * 300.02054 * 8 6 5 11 11 N 1.31513 * 120.00332 * 167.32316 * 10 8 6 12 12 Si 1.86801 * 119.99549 * 347.04451 * 10 8 6 13 13 H 1.48500 * 109.47248 * 180.27353 * 12 10 8 14 14 H 1.48500 * 109.47435 * 300.27694 * 12 10 8 15 15 H 1.48502 * 109.47161 * 60.27914 * 12 10 8 16 16 C 1.52906 * 86.78120 * 24.73650 * 6 5 3 17 17 C 1.52907 * 121.14206 * 209.37578 * 16 6 5 18 18 C 1.53951 * 86.78575 * 209.37433 * 17 16 6 19 19 C 1.52909 * 121.14298 * 100.81175 * 16 6 5 20 20 H 1.09006 * 109.47292 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47548 * 299.99967 * 1 2 3 22 22 H 1.09006 * 109.46704 * 60.00279 * 1 2 3 23 23 H 1.09000 * 113.58033 * 335.13688 * 5 3 2 24 24 H 1.08997 * 113.58128 * 204.34440 * 5 3 2 25 25 H 0.96697 * 114.00308 * 65.58665 * 7 6 5 26 26 H 0.97001 * 119.99863 * 355.12247 * 11 10 8 27 27 H 1.08999 * 113.66341 * 323.85241 * 17 16 6 28 28 H 1.09011 * 113.66208 * 94.90609 * 17 16 6 29 29 H 1.08995 * 113.58181 * 270.13499 * 18 17 16 30 30 H 1.08999 * 113.57645 * 139.33593 * 18 17 16 31 31 H 1.08996 * 113.66467 * 265.10310 * 19 16 6 32 32 H 1.09009 * 113.65899 * 36.15314 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3311 2.0717 -0.3736 5 6 2.6916 1.6784 1.3292 6 6 3.9819 1.0649 0.7557 7 8 5.1584 1.8175 1.0581 8 6 4.1350 -0.4053 1.0493 9 1 4.2073 -1.1135 0.2372 10 6 4.1828 -0.8463 2.3548 11 7 4.0652 -2.1289 2.6204 12 14 4.4226 0.3774 3.7457 13 1 4.4451 -0.3456 5.0427 14 1 5.7085 1.0957 3.5570 15 1 3.3046 1.3548 3.7434 16 6 3.4030 1.3571 -0.6290 17 6 3.7588 0.4866 -1.8347 18 6 3.5448 1.7442 -2.6964 19 6 3.8608 2.5717 -1.4373 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 2.2962 1.1373 2.1888 24 1 2.7577 2.7531 1.4988 25 1 5.3781 1.8428 1.9995 26 1 3.8742 -2.7566 1.9059 27 1 4.7890 0.1305 -1.8284 28 1 3.0364 -0.3060 -2.0305 29 1 2.5204 1.8617 -3.0496 30 1 4.2827 1.8594 -3.4904 31 1 3.2201 3.4450 -1.3155 32 1 4.9198 2.8017 -1.3193 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306364554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:57 Heat of formation + Delta-G solvation = -60.865869 kcal Electronic energy + Delta-G solvation = -15376.190459 eV Core-core repulsion = 12917.112345 eV Total energy + Delta-G solvation = -2459.078113 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.67067 -37.88609 -37.17131 -34.57655 -33.69324 -28.04720 -27.53375 -26.15775 -25.62371 -23.76392 -21.73280 -19.78503 -18.99149 -17.81334 -17.00399 -16.80108 -16.35778 -15.61535 -15.36491 -15.13445 -14.72207 -14.41616 -13.51098 -13.26587 -13.22626 -12.84074 -12.68667 -12.55101 -12.06599 -11.86967 -11.78471 -11.57218 -11.26818 -11.15325 -10.68677 -10.55272 -10.14820 -10.05134 -8.67300 -6.36653 1.36242 1.45209 1.63192 2.46617 2.78590 3.05901 3.60018 3.75104 3.80711 3.96624 4.00506 4.09945 4.34797 4.44884 4.56203 4.57901 4.69234 4.76483 4.81909 4.83298 4.97195 5.09070 5.09960 5.22773 5.33472 5.55877 5.79973 6.00580 6.05631 6.56392 6.58429 7.09762 7.44765 8.65266 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.029426 B = 0.015527 C = 0.012934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.304949 B = 1802.829346 C = 2164.342043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.379 6.379 3 C 0.109 3.891 4 H 0.098 0.902 5 C -0.200 4.200 6 C 0.203 3.797 7 O -0.586 6.586 8 C -0.566 4.566 9 H 0.017 0.983 10 C -0.021 4.021 11 N -0.938 5.938 12 Si 1.071 2.929 13 H -0.294 1.294 14 H -0.251 1.251 15 H -0.238 1.238 16 C -0.096 4.096 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.095 4.095 20 H 0.083 0.917 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.357 0.643 26 H 0.250 0.750 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 11.426 -5.664 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.297 6.297 3 C 0.051 3.949 4 H 0.115 0.885 5 C -0.238 4.238 6 C 0.164 3.836 7 O -0.396 6.396 8 C -0.604 4.604 9 H 0.036 0.964 10 C -0.218 4.218 11 N -0.575 5.575 12 Si 0.893 3.107 13 H -0.220 1.220 14 H -0.177 1.177 15 H -0.161 1.161 16 C -0.097 4.097 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.132 4.132 20 H 0.101 0.899 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.207 0.793 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.629 11.453 -4.703 13.601 hybrid contribution -0.209 -1.184 -0.888 1.495 sum -5.837 10.270 -5.592 13.069 Atomic orbital electron populations 1.22954 0.80682 1.03009 1.00684 1.88125 1.20211 1.27004 1.94382 1.22281 0.92447 0.84905 0.95306 0.88454 1.24539 1.00315 1.00628 0.98335 1.20294 0.80725 0.88625 0.93963 1.86403 1.48686 1.75249 1.29227 1.21960 1.53096 0.92041 0.93335 0.96437 1.27183 0.92394 0.99781 1.02459 1.70931 1.47398 1.03649 1.35500 0.83968 0.79322 0.74412 0.73023 1.22041 1.17671 1.16149 1.22936 0.94838 0.98978 0.92933 1.22398 0.99503 0.97147 0.96630 1.22847 1.02459 0.94409 0.96163 1.22440 1.01588 0.95159 0.94036 0.89866 0.93746 0.92130 0.92604 0.88301 0.79305 0.94151 0.93048 0.93336 0.88814 0.90257 0.89575 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 10.86 113.37 1.23 1.94 16 2 O -0.38 -16.31 9.34 -148.98 -1.39 -17.70 16 3 C 0.11 4.18 4.15 30.89 0.13 4.31 16 4 H 0.10 2.94 7.90 -2.39 -0.02 2.92 16 5 C -0.20 -8.35 5.91 31.23 0.18 -8.17 16 6 C 0.20 9.77 1.06 -11.25 -0.01 9.76 16 7 O -0.59 -27.44 12.71 -148.98 -1.89 -29.33 16 8 C -0.57 -33.27 7.82 25.60 0.20 -33.07 16 9 H 0.02 1.16 7.42 -2.91 -0.02 1.14 16 10 C -0.02 -1.23 5.32 84.66 0.45 -0.78 16 11 N -0.94 -60.54 13.70 21.45 0.29 -60.24 16 12 Si 1.07 49.24 24.79 68.60 1.70 50.94 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.25 -10.20 6.06 99.48 0.60 -9.59 16 15 H -0.24 -9.62 5.65 99.48 0.56 -9.05 16 16 C -0.10 -3.93 0.79 -52.32 -0.04 -3.97 16 17 C -0.12 -4.82 6.71 30.88 0.21 -4.61 16 18 C -0.12 -3.56 8.08 31.23 0.25 -3.31 16 19 C -0.09 -3.05 7.47 30.88 0.23 -2.82 16 20 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 21 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.06 2.54 5.70 -2.39 -0.01 2.52 16 24 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 25 H 0.36 15.44 5.03 -74.06 -0.37 15.07 16 26 H 0.25 16.58 8.73 -92.71 -0.81 15.77 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 2.06 7.83 -2.38 -0.02 2.04 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.73 7.85 -2.38 -0.02 2.71 16 Total: -1.00 -71.20 253.08 1.99 -69.22 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.44 Total: 27.84 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 2.83 Total: -40.73 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.29 Total: -60.24 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -3.28 Total: -47.03 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 1.70 Total: 50.94 kcal Total: -71.20 1.99 -69.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.350 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds