Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48500 * 109.47145 * 239.99785 * 3 2 1 5 5 H 1.48499 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47204 * 119.99457 * 3 2 1 7 7 C 1.38949 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00410 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00104 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99935 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.46922 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.54016 * 56.15765 * 13 12 10 15 15 C 1.54267 * 110.48667 * 293.54475 * 13 12 10 16 16 C 1.53876 * 106.59870 * 217.71131 * 15 13 12 17 17 C 1.54261 * 106.59990 * 0.02562 * 16 15 13 18 18 H 1.08999 * 110.48469 * 264.93049 * 17 16 15 19 19 N 1.46899 * 110.48638 * 142.41928 * 17 16 15 20 20 C 1.54888 * 104.19672 * 23.60631 * 17 16 15 21 21 H 0.97006 * 120.00223 * 0.02562 * 1 2 3 22 22 H 0.97006 * 120.00160 * 0.02562 * 9 7 2 23 23 H 1.08994 * 109.47573 * 60.00712 * 12 10 9 24 24 H 1.08996 * 109.47405 * 299.99962 * 12 10 9 25 25 H 1.08995 * 110.03032 * 98.42858 * 15 13 12 26 26 H 1.08998 * 110.03405 * 336.99797 * 15 13 12 27 27 H 1.08998 * 110.02768 * 119.28860 * 16 15 13 28 28 H 1.08994 * 110.03051 * 240.71540 * 16 15 13 29 29 H 1.00903 * 110.99965 * 61.45507 * 19 17 16 30 30 H 1.00907 * 110.99932 * 185.40836 * 19 17 16 31 31 H 1.09005 * 110.75648 * 80.37263 * 20 17 16 32 32 H 1.08999 * 110.75852 * 203.74195 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0000 13 6 2.2378 -6.0259 0.0007 14 1 2.9177 -5.9472 0.8491 15 6 3.0284 -6.0612 -1.3235 16 6 3.2113 -7.5452 -1.6868 17 6 2.5249 -8.3599 -0.5712 18 1 3.2510 -8.6583 0.1851 19 7 1.8560 -9.5405 -1.1340 20 6 1.4868 -7.3805 0.0306 21 1 -0.4851 0.8401 -0.0004 22 1 0.3532 -2.3907 -0.0002 23 1 0.6173 -4.9206 -0.8903 24 1 0.6166 -4.9209 0.8896 25 1 4.0007 -5.5868 -1.1905 26 1 2.4677 -5.5513 -2.1068 27 1 2.7394 -7.7554 -2.6466 28 1 4.2723 -7.7909 -1.7302 29 1 2.5208 -10.1540 -1.5810 30 1 1.3312 -10.0309 -0.4253 31 1 0.5905 -7.3394 -0.5884 32 1 1.2383 -7.6617 1.0539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306516302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = -63.150065 kcal Electronic energy + Delta-G solvation = -14036.716547 eV Core-core repulsion = 11609.832134 eV Total energy + Delta-G solvation = -2426.884412 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90551 -37.44361 -34.00041 -33.02508 -31.20152 -29.83880 -27.61766 -25.39044 -23.77005 -19.99830 -19.94350 -18.74567 -17.74017 -16.14959 -15.69803 -15.21538 -14.79697 -14.46049 -14.16282 -13.77006 -13.24976 -12.88301 -12.30260 -11.65355 -11.50698 -11.21030 -10.99899 -10.86673 -10.78583 -10.62433 -10.40629 -10.21250 -10.14845 -10.00769 -9.44597 -8.76429 -8.27127 -7.91335 -6.37094 -3.77770 3.22720 3.27916 3.32501 3.99581 4.20774 4.44398 4.72043 4.88760 5.11507 5.28855 5.30927 5.57915 5.68128 5.75448 5.85522 5.96233 6.01320 6.06938 6.20098 6.28898 6.42625 6.47200 6.57602 6.78971 6.89274 7.15304 7.35443 7.58980 8.11120 8.66879 9.22617 9.61260 10.13076 10.80745 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.079963 B = 0.005867 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.077509 B = 4771.617418 C = 4966.710117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.101 0.899 9 N -0.566 5.566 10 C 0.441 3.559 11 O -0.594 6.594 12 C -0.124 4.124 13 C -0.066 4.066 14 H 0.077 0.923 15 C -0.107 4.107 16 C -0.120 4.120 17 C 0.082 3.918 18 H 0.038 0.962 19 N -0.845 5.845 20 C -0.115 4.115 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.337 0.663 30 H 0.338 0.662 31 H 0.076 0.924 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 -13.626 -0.692 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.430 4.430 8 H 0.119 0.881 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.480 6.480 12 C -0.165 4.165 13 C -0.085 4.085 14 H 0.095 0.905 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.029 4.029 18 H 0.055 0.945 19 N -0.374 5.374 20 C -0.153 4.153 21 H 0.081 0.919 22 H 0.226 0.774 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.095 0.905 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.129 -12.921 -1.154 13.021 hybrid contribution 0.339 0.352 0.689 0.845 sum 1.468 -12.569 -0.465 12.663 Atomic orbital electron populations 1.69607 1.05927 1.28171 1.50735 1.25250 0.95610 0.99674 0.97427 0.85935 0.78764 0.80590 0.79016 1.19950 1.20994 1.19959 1.19666 0.93319 0.82446 1.47568 0.88068 1.41932 1.09207 1.04737 1.64297 1.20002 0.88344 0.85031 0.83843 1.90489 1.14001 1.87451 1.56039 1.21564 0.98496 0.93824 1.02597 1.21572 0.96099 0.91982 0.98881 0.90458 1.22047 1.01538 0.94126 0.96768 1.22233 0.99173 0.95789 0.98596 1.22224 0.94781 0.90611 0.95302 0.94452 1.58803 1.31216 1.11406 1.35991 1.22636 0.98342 0.94406 0.99901 0.91878 0.77447 0.90487 0.90680 0.90822 0.92093 0.91203 0.92681 0.85091 0.85020 0.90499 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.53 9.68 -14.93 -0.14 -8.68 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 10 C 0.44 10.57 7.57 -10.99 -0.08 10.49 16 11 O -0.59 -16.02 14.37 5.55 0.08 -15.94 16 12 C -0.12 -2.24 5.09 -27.88 -0.14 -2.38 16 13 C -0.07 -1.07 2.48 -88.95 -0.22 -1.30 16 14 H 0.08 1.36 8.02 -51.93 -0.42 0.95 16 15 C -0.11 -1.76 5.39 -25.61 -0.14 -1.90 16 16 C -0.12 -1.59 6.53 -25.61 -0.17 -1.76 16 17 C 0.08 0.99 3.99 -66.06 -0.26 0.72 16 18 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 19 N -0.85 -8.58 9.26 -3.27 -0.03 -8.61 16 20 C -0.11 -1.50 5.99 -24.73 -0.15 -1.65 16 21 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 23 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 26 H 0.06 1.06 7.77 -51.93 -0.40 0.65 16 27 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.34 2.88 9.07 -39.29 -0.36 2.52 16 30 H 0.34 2.88 9.06 -39.29 -0.36 2.53 16 31 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 266.65 15.07 4.02 4.02 Total: -1.00 -30.64 266.65 -6.40 -37.04 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.70 Total: 12.18 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.40 Total: -5.96 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.64 Total: -47.67 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.08 Total: -15.94 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.64 -6.40 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306516302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.113 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds