Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48500 * 109.47145 * 239.99785 * 3 2 1 5 5 H 1.48499 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47204 * 119.99457 * 3 2 1 7 7 C 1.38949 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00410 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00104 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99935 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.46922 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.54016 * 56.15765 * 13 12 10 15 15 C 1.54267 * 110.48667 * 293.54475 * 13 12 10 16 16 C 1.53876 * 106.59870 * 217.71131 * 15 13 12 17 17 C 1.54261 * 106.59990 * 0.02562 * 16 15 13 18 18 H 1.08999 * 110.48469 * 264.93049 * 17 16 15 19 19 N 1.46899 * 110.48638 * 142.41928 * 17 16 15 20 20 C 1.54888 * 104.19672 * 23.60631 * 17 16 15 21 21 H 0.97006 * 120.00223 * 0.02562 * 1 2 3 22 22 H 0.97006 * 120.00160 * 0.02562 * 9 7 2 23 23 H 1.08994 * 109.47573 * 60.00712 * 12 10 9 24 24 H 1.08996 * 109.47405 * 299.99962 * 12 10 9 25 25 H 1.08995 * 110.03032 * 98.42858 * 15 13 12 26 26 H 1.08998 * 110.03405 * 336.99797 * 15 13 12 27 27 H 1.08998 * 110.02768 * 119.28860 * 16 15 13 28 28 H 1.08994 * 110.03051 * 240.71540 * 16 15 13 29 29 H 1.00903 * 110.99965 * 61.45507 * 19 17 16 30 30 H 1.00907 * 110.99932 * 185.40836 * 19 17 16 31 31 H 1.09005 * 110.75648 * 80.37263 * 20 17 16 32 32 H 1.08999 * 110.75852 * 203.74195 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0000 13 6 2.2378 -6.0259 0.0007 14 1 2.9177 -5.9472 0.8491 15 6 3.0284 -6.0612 -1.3235 16 6 3.2113 -7.5452 -1.6868 17 6 2.5249 -8.3599 -0.5712 18 1 3.2510 -8.6583 0.1851 19 7 1.8560 -9.5405 -1.1340 20 6 1.4868 -7.3805 0.0306 21 1 -0.4851 0.8401 -0.0004 22 1 0.3532 -2.3907 -0.0002 23 1 0.6173 -4.9206 -0.8903 24 1 0.6166 -4.9209 0.8896 25 1 4.0007 -5.5868 -1.1905 26 1 2.4677 -5.5513 -2.1068 27 1 2.7394 -7.7554 -2.6466 28 1 4.2723 -7.7909 -1.7302 29 1 2.5208 -10.1540 -1.5810 30 1 1.3312 -10.0309 -0.4253 31 1 0.5905 -7.3394 -0.5884 32 1 1.2383 -7.6617 1.0539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306516302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = -85.768823 kcal Electronic energy + Delta-G solvation = -14037.697370 eV Core-core repulsion = 11609.832134 eV Total energy + Delta-G solvation = -2427.865235 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50199 -38.94318 -35.98932 -34.22162 -33.25672 -31.14424 -28.84135 -27.10252 -25.33851 -21.54942 -21.02504 -20.43645 -19.72364 -17.64266 -17.20798 -16.45216 -16.08721 -16.00775 -15.81879 -15.48446 -14.72004 -14.23620 -13.99470 -13.54047 -13.07262 -12.80231 -12.47013 -12.42931 -12.14115 -11.93289 -11.89997 -11.78756 -11.54337 -11.47456 -11.30755 -10.24777 -10.00175 -9.56795 -8.45994 -5.94969 1.39548 1.40734 1.52090 2.08716 2.30355 3.20750 3.21976 3.61969 3.72661 3.73385 4.16553 4.33321 4.40006 4.48918 4.57152 4.67631 4.81976 4.89236 4.93156 5.06434 5.13491 5.21946 5.31024 5.40578 5.47858 5.57948 6.01330 6.33617 6.60601 6.68985 7.13069 7.58342 8.13939 8.71440 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.079963 B = 0.005867 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.077509 B = 4771.617418 C = 4966.710117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.437 3.563 11 O -0.629 6.629 12 C -0.114 4.114 13 C -0.067 4.067 14 H 0.060 0.940 15 C -0.108 4.108 16 C -0.113 4.113 17 C 0.088 3.912 18 H 0.044 0.956 19 N -0.847 5.847 20 C -0.104 4.104 21 H 0.278 0.722 22 H 0.396 0.604 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.348 0.652 30 H 0.350 0.650 31 H 0.079 0.921 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -14.649 -0.594 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.226 3.774 11 O -0.516 6.516 12 C -0.154 4.154 13 C -0.087 4.087 14 H 0.079 0.921 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.023 4.023 18 H 0.062 0.938 19 N -0.378 5.378 20 C -0.142 4.142 21 H 0.087 0.913 22 H 0.229 0.771 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.098 0.902 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.419 -13.972 -1.055 14.018 hybrid contribution 0.566 0.640 0.646 1.071 sum 0.985 -13.332 -0.409 13.375 Atomic orbital electron populations 1.69672 1.06872 1.29335 1.50412 1.26048 0.96540 1.02439 0.96291 0.84990 0.77766 0.76652 0.78928 1.19751 1.19399 1.19678 1.19657 0.92696 0.84235 1.50014 0.90385 1.42031 1.09313 1.04901 1.65150 1.21087 0.88299 0.86393 0.81659 1.90466 1.15920 1.88237 1.57012 1.21572 0.98623 0.90741 1.04466 1.21564 0.95842 0.93312 0.97939 0.92135 1.21999 0.99699 0.96248 0.96707 1.22157 1.00115 0.93528 0.99297 1.22081 0.94500 0.91026 0.94719 0.93802 1.58716 1.31447 1.11298 1.36348 1.22546 0.98125 0.92234 1.01261 0.91306 0.77058 0.88753 0.88343 0.93895 0.93505 0.90886 0.91828 0.83848 0.83672 0.90212 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.80 13.05 21.66 0.28 -50.52 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.34 -19.57 9.68 84.04 0.81 -18.76 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.58 -30.57 5.29 -306.98 -1.62 -32.19 16 10 C 0.44 21.30 7.57 87.66 0.66 21.97 16 11 O -0.63 -35.08 14.37 -3.06 -0.04 -35.12 16 12 C -0.11 -4.01 5.09 29.85 0.15 -3.85 16 13 C -0.07 -2.13 2.48 -9.71 -0.02 -2.16 16 14 H 0.06 2.13 8.02 -2.38 -0.02 2.11 16 15 C -0.11 -3.59 5.39 31.32 0.17 -3.42 16 16 C -0.11 -2.84 6.53 31.32 0.20 -2.64 16 17 C 0.09 1.89 3.99 45.99 0.18 2.07 16 18 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 19 N -0.85 -14.49 9.26 -164.24 -1.52 -16.01 16 20 C -0.10 -2.44 5.99 31.89 0.19 -2.25 16 21 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 22 H 0.40 19.97 7.90 -92.70 -0.73 19.24 16 23 H 0.09 3.02 8.05 -2.39 -0.02 3.00 16 24 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 25 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 26 H 0.05 1.64 7.77 -2.39 -0.02 1.62 16 27 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.35 4.85 9.07 -89.69 -0.81 4.04 16 30 H 0.35 4.75 9.06 -89.69 -0.81 3.94 16 31 H 0.08 1.87 8.06 -2.38 -0.02 1.85 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -66.31 266.65 0.72 -65.59 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -1.22 Total: 31.87 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 2.82 Total: -9.30 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -2.86 Total: -98.71 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.04 Total: -35.12 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.31 0.72 -65.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306516302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.176 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds