Wall clock time and date at job start Mon Mar 30 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.90931 * 2 1 4 4 H 1.07998 * 119.99812 * 120.49744 * 3 2 1 5 5 C 1.37879 * 120.00000 * 300.50262 * 3 2 1 6 6 N 1.31510 * 119.99810 * 179.97438 * 5 3 2 7 7 Si 1.86796 * 120.00089 * 359.97438 * 5 3 2 8 8 H 1.48500 * 109.47157 * 90.00019 * 7 5 3 9 9 H 1.48500 * 109.47044 * 209.99952 * 7 5 3 10 10 H 1.48502 * 109.47141 * 330.00337 * 7 5 3 11 11 C 1.54489 * 109.83584 * 120.95597 * 2 1 3 12 12 C 1.55532 * 102.38711 * 98.16431 * 11 2 1 13 13 C 1.53691 * 100.75404 * 32.80619 * 12 11 2 14 14 C 1.53534 * 111.15567 * 202.41560 * 13 12 11 15 15 C 1.54378 * 103.85794 * 260.48603 * 14 13 12 16 16 O 1.43850 * 107.39466 * 2.62701 * 15 14 13 17 17 C 1.44831 * 107.06862 * 334.12520 * 16 15 14 18 18 O 1.42155 * 106.86755 * 325.21141 * 13 12 11 19 19 H 1.08996 * 109.47172 * 179.49519 * 1 2 3 20 20 H 1.09001 * 109.47170 * 299.49779 * 1 2 3 21 21 H 1.09009 * 109.47458 * 59.49755 * 1 2 3 22 22 H 0.96994 * 120.00245 * 180.02562 * 6 5 3 23 23 H 1.09003 * 110.82250 * 216.38400 * 11 2 1 24 24 H 1.08999 * 110.82518 * 339.74171 * 11 2 1 25 25 H 1.09000 * 111.15909 * 274.93629 * 12 11 2 26 26 H 1.08998 * 111.16497 * 150.67895 * 12 11 2 27 27 H 1.08999 * 110.54695 * 141.89275 * 14 13 12 28 28 H 1.08996 * 110.67113 * 19.14293 * 14 13 12 29 29 H 1.09002 * 109.88398 * 122.12141 * 15 14 13 30 30 H 1.09000 * 109.88124 * 243.13418 * 15 14 13 31 31 H 1.08998 * 110.51787 * 279.94436 * 17 16 15 32 32 H 1.08998 * 110.79366 * 157.03395 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0432 1.4170 0.0000 4 1 2.6734 1.7630 0.8059 5 6 1.7081 2.2716 -1.0288 6 7 2.1555 3.5082 -1.0285 7 14 0.6186 1.6728 -2.4230 8 1 -0.8047 1.9245 -2.0821 9 1 0.9652 2.4012 -3.6698 10 1 0.8290 0.2168 -2.6254 11 6 2.0542 -0.7475 1.2462 12 6 2.3704 -2.1608 0.6791 13 6 2.8061 -1.8050 -0.7511 14 6 2.6490 -3.0069 -1.6934 15 6 4.0762 -3.5867 -1.7945 16 8 4.9195 -2.8068 -0.9285 17 6 4.3113 -1.4978 -0.8090 18 8 2.0173 -0.6948 -1.1585 19 1 -0.3633 -1.0276 -0.0091 20 1 -0.3633 0.5060 0.8945 21 1 -0.3634 0.5216 -0.8855 22 1 1.9195 4.1095 -1.7520 23 1 2.9572 -0.2736 1.6310 24 1 1.2866 -0.7993 2.0184 25 1 1.4808 -2.7908 0.6742 26 1 3.1822 -2.6340 1.2315 27 1 2.2978 -2.6819 -2.6728 28 1 1.9663 -3.7426 -1.2682 29 1 4.0768 -4.6282 -1.4730 30 1 4.4332 -3.5158 -2.8219 31 1 4.5452 -0.8868 -1.6808 32 1 4.6374 -1.0016 0.1050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306991536.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:19 Heat of formation + Delta-G solvation = -83.622980 kcal Electronic energy + Delta-G solvation = -15336.120839 eV Core-core repulsion = 12876.055904 eV Total energy + Delta-G solvation = -2460.064936 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.99336 -37.40661 -33.06971 -31.46629 -31.35268 -29.62255 -27.07386 -25.30053 -23.34376 -21.90442 -20.00137 -19.44326 -16.65628 -16.21589 -15.86572 -15.03228 -14.62309 -14.36112 -13.52826 -13.28124 -12.72130 -12.65309 -12.28750 -12.14366 -11.83134 -11.50993 -11.28343 -11.14942 -10.95778 -10.41801 -10.09289 -10.04104 -9.98414 -9.67491 -9.25169 -8.99260 -8.56695 -8.22613 -6.11675 -4.19619 3.34560 3.44157 3.65785 4.19916 4.50334 4.70536 4.94674 5.13322 5.27173 5.35885 5.40098 5.44211 5.72760 5.91176 5.93358 6.02604 6.16489 6.19251 6.24483 6.31225 6.34203 6.42926 6.52857 6.59530 6.73624 6.78468 7.13832 7.28962 7.66424 8.25173 8.46103 8.89065 9.53660 10.99127 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.037458 B = 0.012537 C = 0.012049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.324353 B = 2232.800336 C = 2323.379932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.189 3.811 3 C -0.523 4.523 4 H 0.077 0.923 5 C 0.084 3.916 6 N -0.892 5.892 7 Si 0.880 3.120 8 H -0.288 1.288 9 H -0.302 1.302 10 H -0.225 1.225 11 C -0.129 4.129 12 C -0.141 4.141 13 C 0.078 3.922 14 C -0.153 4.153 15 C 0.051 3.949 16 O -0.384 6.384 17 C 0.042 3.958 18 O -0.353 6.353 19 H 0.033 0.967 20 H 0.061 0.939 21 H 0.046 0.954 22 H 0.265 0.735 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -12.204 0.259 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.152 3.848 3 C -0.560 4.560 4 H 0.095 0.905 5 C -0.120 4.120 6 N -0.529 5.529 7 Si 0.711 3.289 8 H -0.216 1.216 9 H -0.230 1.230 10 H -0.149 1.149 11 C -0.167 4.167 12 C -0.178 4.178 13 C 0.037 3.963 14 C -0.191 4.191 15 C -0.026 4.026 16 O -0.304 6.304 17 C -0.035 4.035 18 O -0.274 6.274 19 H 0.052 0.948 20 H 0.080 0.920 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.190 -12.050 0.070 12.052 hybrid contribution -0.766 -0.010 -0.721 1.053 sum -0.956 -12.060 -0.651 12.115 Atomic orbital electron populations 1.22274 0.97642 0.99003 1.01409 1.20237 0.90465 0.92332 0.81770 1.21112 1.33116 0.92118 1.09669 0.90486 1.25024 0.95056 0.94256 0.97629 1.69919 1.44535 1.05563 1.32925 0.87014 0.79325 0.81714 0.80885 1.21573 1.23047 1.14913 1.23097 1.01436 0.93490 0.98656 1.23051 1.00922 0.98230 0.95643 1.22536 0.92033 0.88266 0.93442 1.22870 0.97230 0.97426 1.01598 1.23083 0.89498 0.95602 0.94421 1.88895 1.48071 1.24918 1.68488 1.23805 0.92374 0.84407 1.02894 1.88686 1.66427 1.39494 1.32750 0.94802 0.92016 0.93563 0.92578 0.90911 0.91591 0.91346 0.90756 0.90014 0.90535 0.90453 0.92776 0.91352 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.23 37.16 0.31 -2.84 16 2 C 0.19 4.36 0.79 -90.99 -0.07 4.29 16 3 C -0.52 -14.45 8.83 -34.44 -0.30 -14.75 16 4 H 0.08 2.28 7.77 -52.49 -0.41 1.88 16 5 C 0.08 2.44 5.45 -17.82 -0.10 2.34 16 6 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 7 Si 0.88 22.35 23.92 -169.99 -4.07 18.29 16 8 H -0.29 -7.14 6.87 56.52 0.39 -6.75 16 9 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 10 H -0.23 -5.56 5.36 56.52 0.30 -5.26 16 11 C -0.13 -2.49 5.90 -24.60 -0.15 -2.64 16 12 C -0.14 -2.38 5.98 -25.03 -0.15 -2.53 16 13 C 0.08 1.47 1.07 -89.61 -0.10 1.38 16 14 C -0.15 -2.40 6.41 -25.73 -0.16 -2.57 16 15 C 0.05 0.73 7.72 37.88 0.29 1.03 16 16 O -0.38 -6.69 11.55 -35.23 -0.41 -7.10 16 17 C 0.04 0.78 6.82 37.53 0.26 1.04 16 18 O -0.35 -8.12 7.18 -35.23 -0.25 -8.37 16 19 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 21 H 0.05 1.06 3.25 -51.92 -0.17 0.89 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.07 1.44 7.60 -51.93 -0.39 1.05 16 24 H 0.07 1.15 7.82 -51.93 -0.41 0.75 16 25 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 26 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 27 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 28 H 0.08 1.05 7.64 -51.93 -0.40 0.65 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.10 1.81 7.83 -51.93 -0.41 1.41 16 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -30.42 248.00 -5.17 -35.59 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.78 Total: -0.43 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.17 Total: -15.27 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.66 Total: -15.47 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.07 Total: 18.29 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.42 -5.17 -35.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306991536.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.033 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds