Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 110.08119 * 2 1 4 4 O 1.43969 * 109.92395 * 238.76608 * 2 1 3 5 5 C 1.44456 * 107.01114 * 214.38322 * 4 2 1 6 6 C 1.55167 * 103.58937 * 39.56003 * 5 4 2 7 7 C 1.53303 * 109.92155 * 121.22767 * 2 1 3 8 8 C 1.53321 * 110.91541 * 240.81976 * 7 2 1 9 9 C 1.55013 * 103.82116 * 120.85790 * 8 7 2 10 10 C 1.55055 * 102.11344 * 339.11337 * 9 8 7 11 11 H 1.09003 * 110.58831 * 277.97035 * 10 9 8 12 12 C 1.50701 * 110.71775 * 155.12166 * 10 9 8 13 13 H 1.07996 * 119.99877 * 4.23484 * 12 10 9 14 14 C 1.37872 * 119.99946 * 184.23750 * 12 10 9 15 15 N 1.31515 * 120.00243 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99987 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47548 * 89.99843 * 16 14 12 18 18 H 1.48499 * 109.46977 * 209.99945 * 16 14 12 19 19 H 1.48506 * 109.46810 * 329.99338 * 16 14 12 20 20 O 1.42821 * 111.32022 * 1.46372 * 7 2 1 21 21 H 1.08994 * 109.47011 * 179.77817 * 1 2 3 22 22 H 1.08997 * 109.47006 * 299.77698 * 1 2 3 23 23 H 1.08996 * 109.46686 * 59.77591 * 1 2 3 24 24 H 1.09001 * 110.59869 * 158.08497 * 5 4 2 25 25 H 1.08993 * 110.60002 * 280.87903 * 5 4 2 26 26 H 1.09003 * 110.94654 * 81.74969 * 6 5 4 27 27 H 1.08998 * 110.94302 * 205.41350 * 6 5 4 28 28 H 1.08999 * 110.55151 * 239.44285 * 8 7 2 29 29 H 1.08992 * 110.55243 * 2.26918 * 8 7 2 30 30 H 1.09001 * 110.90061 * 220.90674 * 9 8 7 31 31 H 1.08999 * 110.93886 * 97.33287 * 9 8 7 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9043 1.0237 0.0000 4 8 2.0207 -0.7018 -1.1573 5 6 3.2365 -1.3734 -0.7604 6 6 2.9184 -1.8892 0.6680 7 6 2.0524 -0.7472 1.2325 8 6 2.8954 0.1786 2.1173 9 6 2.1578 0.1606 3.4806 10 6 0.7358 -0.3060 3.0749 11 1 0.1486 0.5334 2.7024 12 6 0.0385 -0.9636 4.2379 13 1 0.5144 -0.9919 5.2069 14 6 -1.2069 -1.5292 4.0647 15 7 -1.7866 -1.4943 2.8847 16 14 -2.0715 -2.3438 5.5063 17 1 -2.9009 -1.3387 6.2183 18 1 -2.9410 -3.4392 5.0072 19 1 -1.0596 -2.9012 6.4395 20 8 0.9789 -1.2643 2.0198 21 1 -0.3633 -1.0276 -0.0040 22 1 -0.3633 0.5104 0.8920 23 1 -0.3632 0.5173 -0.8880 24 1 3.4506 -2.2064 -1.4301 25 1 4.0721 -0.6740 -0.7408 26 1 2.3558 -2.8221 0.6292 27 1 3.8315 -2.0111 1.2506 28 1 3.9075 -0.2117 2.2245 29 1 2.9149 1.1877 1.7059 30 1 2.1293 1.1575 3.9205 31 1 2.6203 -0.5511 4.1644 32 1 -2.6626 -1.8926 2.7627 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307094340.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -94.719181 kcal Electronic energy + Delta-G solvation = -15206.875785 eV Core-core repulsion = 12746.329682 eV Total energy + Delta-G solvation = -2460.546103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87537 -36.83857 -32.70025 -31.33625 -30.63221 -30.46885 -27.13728 -24.68399 -22.45159 -21.78161 -20.16703 -19.30110 -16.59529 -15.93075 -15.47625 -14.94653 -14.60791 -14.41203 -13.44255 -13.25862 -12.82237 -12.10166 -11.90674 -11.77055 -11.49970 -11.26741 -10.94383 -10.92555 -10.63360 -10.55111 -10.27262 -10.14214 -9.92019 -9.58393 -9.25608 -9.09139 -8.60040 -7.99841 -6.03054 -4.15432 3.29601 3.36925 3.39775 4.34224 4.40891 4.85824 5.06690 5.30913 5.36683 5.43823 5.53673 5.61939 5.82446 5.98032 6.02792 6.06890 6.20247 6.28834 6.42576 6.50223 6.59720 6.68610 6.69042 6.78315 6.85891 7.28290 7.42167 7.53404 7.87526 8.20601 8.55326 8.95784 9.54868 11.04229 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.044422 B = 0.010359 C = 0.009545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.173386 B = 2702.413505 C = 2932.630943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.062 3.938 3 H 0.058 0.942 4 O -0.380 6.380 5 C 0.048 3.952 6 C -0.147 4.147 7 C 0.069 3.931 8 C -0.144 4.144 9 C -0.148 4.148 10 C 0.207 3.793 11 H 0.030 0.970 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.079 3.921 15 N -0.858 5.858 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 O -0.327 6.327 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 2.169 -3.795 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.004 3.996 3 H 0.076 0.924 4 O -0.299 6.299 5 C -0.029 4.029 6 C -0.184 4.184 7 C 0.027 3.973 8 C -0.182 4.182 9 C -0.186 4.186 10 C 0.152 3.848 11 H 0.047 0.953 12 C -0.570 4.570 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.494 5.494 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.245 6.245 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.497 1.922 -4.141 8.778 hybrid contribution -0.195 -0.268 0.936 0.993 sum 7.302 1.654 -3.205 8.144 Atomic orbital electron populations 1.21679 0.91999 1.04157 1.00923 1.23304 0.96902 0.94215 0.85137 0.92430 1.88886 1.39639 1.67519 1.33886 1.23444 0.88011 0.95926 0.95512 1.23160 0.99608 0.99987 0.95684 1.22606 0.89608 0.92631 0.92438 1.22980 0.98915 0.99007 0.97252 1.23271 0.99275 1.00672 0.95401 1.20789 0.89272 0.88954 0.85824 0.95297 1.20965 1.01580 1.40232 0.94264 0.91862 1.25050 0.97051 0.95112 0.95545 1.70014 1.15096 1.42622 1.21688 0.86623 0.79571 0.79255 0.82660 1.20581 1.21107 1.19834 1.89239 1.48359 1.44906 1.42043 0.90763 0.90176 0.94374 0.89649 0.92901 0.89745 0.90559 0.91721 0.91861 0.92223 0.91668 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.61 37.16 0.32 -2.45 16 2 C 0.06 1.22 3.74 -26.57 -0.10 1.12 16 3 H 0.06 1.04 7.13 -51.93 -0.37 0.67 16 4 O -0.38 -7.27 11.20 -35.23 -0.39 -7.67 16 5 C 0.05 0.74 7.73 38.30 0.30 1.04 16 6 C -0.15 -2.56 6.45 -25.05 -0.16 -2.72 16 7 C 0.07 1.40 1.07 -89.76 -0.10 1.30 16 8 C -0.14 -2.57 6.31 -25.50 -0.16 -2.74 16 9 C -0.15 -3.05 6.57 -24.58 -0.16 -3.21 16 10 C 0.21 5.19 2.76 -26.80 -0.07 5.12 16 11 H 0.03 0.78 6.52 -51.93 -0.34 0.44 16 12 C -0.53 -14.72 8.83 -34.44 -0.30 -15.03 16 13 H 0.06 1.70 7.78 -52.49 -0.41 1.30 16 14 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 15 N -0.86 -24.74 12.94 55.43 0.72 -24.02 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 O -0.33 -8.25 8.65 -35.23 -0.30 -8.55 16 21 H 0.07 1.77 7.82 -51.93 -0.41 1.37 16 22 H 0.08 1.84 6.04 -51.93 -0.31 1.52 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.60 8.10 -51.93 -0.42 1.17 16 27 H 0.08 1.16 7.35 -51.93 -0.38 0.78 16 28 H 0.06 1.02 7.26 -51.93 -0.38 0.64 16 29 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 255.23 15.07 3.85 3.85 Total: -1.00 -29.59 255.23 -6.33 -35.92 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.63 Total: -0.22 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.54 Total: -15.48 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.72 Total: -24.02 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.70 Total: -16.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.59 -6.33 -35.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307094340.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.799 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds