Wall clock time and date at job start Mon Mar 30 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20818 * 120.00197 * 2 1 4 4 O 1.34230 * 119.99763 * 180.27513 * 2 1 3 5 5 C 1.45198 * 117.00173 * 179.97438 * 4 2 1 6 6 H 1.08995 * 109.47027 * 29.99963 * 5 4 2 7 7 C 1.53003 * 109.46946 * 270.00291 * 5 4 2 8 8 C 1.53005 * 109.46827 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46872 * 60.00000 * 8 7 5 10 10 C 1.52994 * 109.47334 * 299.99771 * 9 8 7 11 11 C 1.52995 * 109.47327 * 60.00302 * 10 9 8 12 12 H 1.09003 * 109.47531 * 59.99628 * 11 10 9 13 13 C 1.50699 * 109.47495 * 180.02562 * 11 10 9 14 14 H 1.08001 * 120.00230 * 120.00250 * 13 11 10 15 15 C 1.37880 * 119.99509 * 299.99806 * 13 11 10 16 16 N 1.31522 * 119.99717 * 179.97438 * 15 13 11 17 17 Si 1.86795 * 120.00334 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47075 * 89.99836 * 17 15 13 19 19 H 1.48500 * 109.47153 * 209.99914 * 17 15 13 20 20 H 1.48503 * 109.47138 * 330.00031 * 17 15 13 21 21 H 1.09001 * 109.46740 * 239.72512 * 1 2 3 22 22 H 1.09001 * 109.46949 * 359.72041 * 1 2 3 23 23 H 1.09000 * 109.47161 * 119.72370 * 1 2 3 24 24 H 1.09003 * 109.46818 * 299.99445 * 7 5 4 25 25 H 1.08999 * 109.47362 * 60.00092 * 7 5 4 26 26 H 1.08996 * 109.46730 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47280 * 299.99755 * 8 7 5 28 28 H 1.09000 * 109.47019 * 60.00128 * 9 8 7 29 29 H 1.08999 * 109.46771 * 179.97438 * 9 8 7 30 30 H 1.08995 * 109.47173 * 180.02562 * 10 9 8 31 31 H 1.09008 * 109.47187 * 300.00398 * 10 9 8 32 32 H 0.96993 * 119.99708 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1782 -1.1625 -0.0056 5 6 3.6282 -1.0866 -0.0058 6 1 3.9446 -0.1812 0.5120 7 6 4.1369 -1.0533 -1.4484 8 6 5.6648 -0.9726 -1.4486 9 6 6.2401 -2.1965 -0.7330 10 6 5.7314 -2.2299 0.7095 11 6 4.2036 -2.3105 0.7098 12 1 3.8873 -3.2160 0.1920 13 6 3.7024 -2.3427 2.1306 14 1 3.0398 -1.5680 2.4873 15 6 4.0898 -3.3613 2.9753 16 7 3.6529 -3.3891 4.2155 17 14 5.2364 -4.7008 2.3587 18 1 6.6447 -4.2979 2.6026 19 1 4.9517 -5.9670 3.0805 20 1 5.0243 -4.9025 0.9028 21 1 -0.3633 -0.5181 0.8875 22 1 -0.3633 1.0277 0.0050 23 1 -0.3633 -0.5095 -0.8924 24 1 3.8204 -1.9587 -1.9662 25 1 3.7273 -0.1811 -1.9581 26 1 6.0272 -0.9494 -2.4763 27 1 5.9809 -0.0671 -0.9309 28 1 5.9240 -3.1021 -1.2508 29 1 7.3286 -2.1393 -0.7336 30 1 6.1416 -3.1015 1.2194 31 1 6.0475 -1.3242 1.2273 32 1 3.9257 -4.1055 4.8098 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307312697.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:20 Heat of formation + Delta-G solvation = -107.484687 kcal Electronic energy + Delta-G solvation = -14842.882343 eV Core-core repulsion = 12381.782686 eV Total energy + Delta-G solvation = -2461.099657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.94714 -37.68238 -35.34873 -32.84553 -30.41756 -30.30424 -28.92642 -24.72650 -22.51735 -21.03847 -20.20557 -19.19875 -17.10073 -16.65411 -15.91343 -15.51009 -14.69776 -13.74890 -13.60823 -13.41413 -13.05661 -12.89438 -12.51420 -12.20973 -12.08491 -11.67164 -11.26139 -11.00505 -10.84913 -10.46321 -10.30251 -10.19124 -9.98443 -9.83198 -9.69107 -9.06426 -8.84090 -8.54127 -6.06728 -4.05430 2.76912 3.25655 3.36840 3.38996 3.41719 4.40288 5.09591 5.23747 5.26560 5.29740 5.38668 5.54148 5.61946 5.79096 5.88072 5.97927 6.03070 6.10547 6.14389 6.24834 6.34202 6.51474 6.58069 6.74198 6.85340 6.96907 7.18262 7.50097 7.72293 8.38705 8.51179 8.96769 9.54286 11.06694 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.013272 C = 0.009616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.590122 B = 2109.203535 C = 2911.147909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.455 3.545 3 O -0.530 6.530 4 O -0.334 6.334 5 C 0.111 3.889 6 H 0.078 0.922 7 C -0.136 4.136 8 C -0.109 4.109 9 C -0.126 4.126 10 C -0.119 4.119 11 C 0.019 3.981 12 H 0.037 0.963 13 C -0.507 4.507 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.900 5.900 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.297 1.297 20 H -0.264 1.264 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 2.799 -10.592 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.299 3.701 3 O -0.421 6.421 4 O -0.249 6.249 5 C 0.057 3.943 6 H 0.096 0.904 7 C -0.174 4.174 8 C -0.146 4.146 9 C -0.164 4.164 10 C -0.157 4.157 11 C 0.000 4.000 12 H 0.055 0.945 13 C -0.545 4.545 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.189 1.189 21 H 0.118 0.882 22 H 0.111 0.889 23 H 0.112 0.888 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.579 2.979 -10.419 10.852 hybrid contribution 0.695 -0.691 -0.107 0.986 sum 0.116 2.288 -10.526 10.772 Atomic orbital electron populations 1.21590 0.88383 1.04973 1.05478 1.23685 0.92062 0.82381 0.71942 1.90608 1.71139 1.33498 1.46846 1.86572 1.23176 1.33114 1.82057 1.22804 0.74802 1.01914 0.94817 0.90399 1.21995 0.96360 1.01739 0.97305 1.21407 0.94443 0.98899 0.99876 1.21677 0.99295 0.97802 0.97619 1.21958 0.97900 1.01620 0.94176 1.19253 0.90851 0.92866 0.97046 0.94464 1.20910 1.29299 1.11091 0.93197 0.90951 1.24993 0.95979 0.97508 0.94683 1.69897 1.45133 1.33293 1.05531 0.86870 0.80983 0.81212 0.79324 1.20579 1.22475 1.18936 0.88215 0.88863 0.88831 0.91476 0.92461 0.92286 0.91889 0.92368 0.92701 0.92785 0.91817 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.43 36.01 0.38 -1.51 16 2 C 0.46 8.56 8.04 36.01 0.29 8.85 16 3 O -0.53 -11.30 16.31 -18.74 -0.31 -11.61 16 4 O -0.33 -7.05 9.48 -39.26 -0.37 -7.42 16 5 C 0.11 2.37 1.82 -26.73 -0.05 2.32 16 6 H 0.08 1.79 7.16 -51.93 -0.37 1.42 16 7 C -0.14 -2.38 5.56 -26.73 -0.15 -2.53 16 8 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 9 C -0.13 -2.15 5.92 -26.73 -0.16 -2.31 16 10 C -0.12 -2.53 4.68 -26.74 -0.13 -2.66 16 11 C 0.02 0.44 1.45 -91.77 -0.13 0.31 16 12 H 0.04 0.90 7.20 -51.93 -0.37 0.53 16 13 C -0.51 -14.34 8.81 -34.44 -0.30 -14.64 16 14 H 0.07 2.26 7.95 -52.49 -0.42 1.84 16 15 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 16 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 17 Si 0.89 21.81 24.37 -169.99 -4.14 17.66 16 18 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 19 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 21 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 22 H 0.09 1.04 8.12 -51.93 -0.42 0.61 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 1.21 3.27 -51.93 -0.17 1.04 16 31 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 257.99 15.07 3.89 3.89 Total: -1.00 -32.03 257.99 -5.41 -37.43 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.74 Total: -1.00 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.51 Total: -12.12 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.84 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.68 Total: -19.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.03 -5.41 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307312697.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.053 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds